CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
OQU78269

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G39730.1	OQU78269	AT5G42980.1	15352244

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d048592_P001	Maize	plastid	80.76	82.51
EES10316	Sorghum	plastid	72.52	77.95
TraesCS4D01G134900.1	Wheat	plastid	71.04	77.78
TraesCS4A01G177600.1	Wheat	plastid	71.04	77.78
TraesCS4B01G140200.1	Wheat	plastid	70.61	77.31
Os11t0707000-02	Rice	plastid	70.61	77.14
CDX74838	Canola	plastid	75.69	76.5
CDY20474	Canola	plastid	75.69	76.5
GSMUA_Achr10P...	Banana	plastid	65.12	75.68
CDY07640	Canola	plastid	75.69	75.37
GSMUA_Achr2P16450_001	Banana	plastid	75.69	75.37
VIT_08s0007g00840.t01	Wine grape	plastid	75.48	75.32
CDY24950	Canola	plastid	75.48	75.16
AT2G39730.1	Thale cress	plastid	74.84	74.68
Bra005019.1-P	Field mustard	plastid	74.84	74.53
Bra000144.1-P	Field mustard	plastid	74.63	74.32
KRH65878	Soybean	plastid	74.42	74.26
CDX93240	Canola	plastid	68.71	74.03
VIT_06s0004g05180.t01	Wine grape	plastid	73.78	73.94
Bra017055.1-P	Field mustard	plastid	69.13	73.81
GSMUA_Achr11P...	Banana	plasma membrane, plastid	68.29	73.74
TraesCS4B01G140300.1	Wheat	plastid	72.3	73.71
TraesCS4D01G135000.9	Wheat	plastid	72.09	73.49
TraesCS4A01G177500.1	Wheat	plastid	72.09	73.49
KRH15079	Soybean	nucleus, plastid	74.0	73.22
VIT_13s0019g02050.t01	Wine grape	plastid	67.65	73.06
PGSC0003DMT400028767	Potato	plastid	67.23	72.6
KRH73060	Soybean	nucleus, plastid	72.94	72.18
KRH31002	Soybean	nucleus, plastid	67.23	71.78
KRG97874	Soybean	plastid	66.17	70.65
Solyc09g011080.2.1	Tomato	plastid	65.12	70.16
PGSC0003DMT400049256	Potato	cytosol, plastid	64.06	69.34
Solyc10g086580.1.1	Tomato	plastid	64.69	68.76
HORVU4Hr1G027260.12	Barley	cytosol	65.96	66.95
CDY68720	Canola	cytosol	15.01	59.17
KRH75848	Soybean	endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole	14.16	56.78
CDY21872	Canola	cytosol	15.22	56.25
KRH55240	Soybean	cytosol	8.67	50.0
OQU82488	Sorghum	plastid	38.9	42.49
PGSC0003DMT400091016	Potato	plastid	12.69	32.61

Protein Annotations

Gene3D:1.10.8.1070	MapMan:1.2.1.3.2	Gene3D:3.40.50.300	EntrezGene:8086041	InterPro:ATPase_AAA_core	UniProt:C5Y1T6
ncoils:Coil	EnsemblPlants:EES10317	ProteinID:EES10317	ProteinID:EES10317.1	GO:GO:0000166	GO:GO:0003674
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0008150	GO:GO:0009536	GO:GO:0009570	GO:GO:0009579	GO:GO:0030234	GO:GO:0043085
GO:GO:0046863	InterPro:P-loop_NTPase	PFAM:PF00004	PANTHER:PTHR32429	PANTHER:PTHR32429:SF8	EnsemblPlantsGene:SORBI_3005G231600
SUPFAM:SSF52540	unigene:Sbi.14055	UniParc:UPI0001A86ACB	RefSeq:XP_002451329.1	SEG:seg	:

Description

hypothetical protein

Coordinates

chr5:-:71760176..71762262

Molecular Weight (calculated)

52181.2 Da

IEP (calculated)

6.386

GRAVY (calculated)

-0.361

Length

473 amino acids

Sequence
(BLAST)

001: MAAAFSSTSV VVAVPVTTST AANSFLGSNN NNKQKLTVSS IRKKKQHQQG GRGLIIIRAM AAVNKQEVDE TKQTEQDRWR GLAYDTSDDQ QDITRGKGMI
101: DSLFQAPMGD GTHVAVLSSY DYISQGLRQY NTMDGYYIAP AFMDKLVLHI AKNFMTLPNI KVPLILGIWG GKGQGKSFQC ELVFAKMGIN PIVMSAGELE
201: SGNAGEPAKL IRQRYREAAD LISKGKMSCL FINDLDAGAG RMGGTTQYTV NNQMVNATLM NIADNPTNVQ LPGMYSKVDN PRVPIIVTGN DFSTLYAPLI
301: RDGRMDKFYW APTRDDRIGV CKGIFRTDGV PDEHVVQLVD AFPGQSIDFF GALRARVYDD EVRRWVAETG VENIARRLVN SKEAPPTFEQ PRMTLDKLME
401: YGRMLEEEQE NVKRVQLADK YLTEAALGDA NDFYGKAAQQ VHVPVPVPEG CTDPRAGNFD PVARSDDGSC VYN

Best Arabidopsis Sequence Match ( AT2G39730.1 )
(BLAST)

001: MAAAVSTVGA INRAPLSLNG SGSGAVSAPA STFLGKKVVT VSRFAQSNKK SNGSFKVLAV KEDKQTDGDR WRGLAYDTSD DQQDITRGKG MVDSVFQAPM
101: GTGTHHAVLS SYEYVSQGLR QYNLDNMMDG FYIAPAFMDK LVVHITKNFL TLPNIKVPLI LGIWGGKGQG KSFQCELVMA KMGINPIMMS AGELESGNAG
201: EPAKLIRQRY REAADLIKKG KMCCLFINDL DAGAGRMGGT TQYTVNNQMV NATLMNIADN PTNVQLPGMY NKEENARVPI ICTGNDFSTL YAPLIRDGRM
301: EKFYWAPTRE DRIGVCKGIF RTDKIKDEDI VTLVDQFPGQ SIDFFGALRA RVYDDEVRKF VESLGVEKIG KRLVNSREGP PVFEQPEMTY EKLMEYGNML
401: VMEQENVKRV QLAETYLSQA ALGDANADAI GRGTFYGKGA QQVNLPVPEG CTDPVAENFD PTARSDDGTC VYNF

Arabidopsis Description

RCARibulose bisphosphate carboxylase/oxygenase activase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P10896]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.