Factsheet for PGSC0003DMT400049256

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 10
mitochondrion 1

Predictors

GFP

MS/MS

Papers

cytosol: 22313117

msms PMID: 22313117 doi

S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto

Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g086580.1.1	Tomato	plastid	94.51	92.81
PGSC0003DMT400028767	Potato	plastid	84.67	84.47
GSMUA_Achr11P...	Banana	plasma membrane, plastid	77.57	77.4
GSMUA_Achr10P...	Banana	plastid	72.08	77.4
Os11t0707000-02	Rice	plastid	75.29	75.98
Bra017055.1-P	Field mustard	plastid	76.89	75.85
TraesCS4D01G134900.1	Wheat	plastid	73.68	74.54
TraesCS4A01G177600.1	Wheat	plastid	73.68	74.54
TraesCS4B01G140200.1	Wheat	plastid	73.0	73.84
Zm00001d048593_P001	Maize	plastid	72.77	73.44
EES10316	Sorghum	plastid	73.23	72.73
GSMUA_Achr2P16450_001	Banana	plastid	77.8	71.58
Bra000144.1-P	Field mustard	plastid	77.12	70.95
Bra005019.1-P	Field mustard	plastid	76.66	70.53
AT2G39730.1	Thale cress	plastid	76.2	70.25
TraesCS4D01G135000.9	Wheat	plastid	74.14	69.83
TraesCS4A01G177500.1	Wheat	plastid	73.91	69.61
TraesCS4B01G140300.1	Wheat	plastid	73.46	69.18
HORVU4Hr1G027260.12	Barley	cytosol	73.68	69.1
Zm00001d048592_P001	Maize	plastid	69.11	65.23
EES10317	Sorghum	plastid	69.34	64.06
PGSC0003DMT400036879	Potato	extracellular	35.01	52.04
Os11t0707100-00	Rice	golgi, mitochondrion, plastid	17.16	37.5
PGSC0003DMT400091016	Potato	plastid	14.42	34.24
Os11t0707050-00	Rice	cytosol, nucleus, plastid	5.49	33.33

Protein Annotations

EMBL:HQ259068	EnsemblPlants:PGSC0003DMT400049256	EnsemblPlantsGene:PGSC0003DMG400019149	EntrezGene:102596435	Gene3D:1.10.8.1070	Gene3D:3.40.50.300
GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	InterPro:ATPase_AAA_core	InterPro:P-loop_NTPase
PANTHER:PTHR32429	PANTHER:PTHR32429:SF8	PFAM:PF00004	PGSC:PGSC0003DMG400019149	ProteinID:ADQ27442	ProteinID:ADQ27442.1
RefSeq:XP_006349493.1	SUPFAM:SSF52540	UniParc:UPI0002952BF1	UniProt:M1BNH8	MapMan:1.2.1.3.2	:

Description

Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic [Source:PGSC_GENE;Acc:PGSC0003DMG400019149]

Coordinates

chr10:+:50945736..50948506

Molecular Weight (calculated)

48122.7 Da

IEP (calculated)

8.161

GRAVY (calculated)

-0.330

Length

437 amino acids

Sequence
(BLAST)

001: MAASVSTIGA ASKAPLSLNN SVAGTSVPST AFFGKSLKKV YAKGISSPKV SNRNLRIVAQ EIDESKETKE DRWKGLYENA SDDQQDIARG KGMVDSLFQA
101: PTGTGTHHAI MNSYEYVSQA LKTYQMDNKL DGFYIAPSFM DKLVVHITKN FLSLPNIKVP LILGVWGGKG QGKSFQCELV FRKMGINPIM MSAGELESGN
201: AGEPAKLIRQ RYREAAEIIR KGNMCCLFIN DLDAGAGRMG GTTQYTVNNQ MVNATLMNIA DNPTNVQLPG MYNKQENCRV PIIVTGNDFS TLYAPLIRDG
301: RMEKFYWAPT REDRIGVCKG IFRTDNVPEE AVVKIVDSFP GQSIDFFGAL RARVYDDEVR KWVSGTGIEQ IGDKLLNSRD GPPTFEQPKM TLEKLLGYGN
401: MLVQEQENVK RVQLAETYLK EAALGDANAD AINTGTF

Best Arabidopsis Sequence Match ( AT2G39730.3 )
(BLAST)

001: MAAAVSTVGA INRAPLSLNG SGSGAVSAPA STFLGKKVVT VSRFAQSNKK SNGSFKVLAV KEDKQTDGDR WRGLAYDTSD DQQDITRGKG MVDSVFQAPM
101: GTGTHHAVLS SYEYVSQGLR QYNLDNMMDG FYIAPAFMDK LVVHITKNFL TLPNIKVPLI LGIWGGKGQG KSFQCELVMA KMGINPIMMS AGELESGNAG
201: EPAKLIRQRY REAADLIKKG KMCCLFINDL DAGAGRMGGT TQYTVNNQMV NATLMNIADN PTNVQLPGMY NKEENARVPI ICTGNDFSTL YAPLIRDGRM
301: EKFYWAPTRE DRIGVCKGIF RTDKIKDEDI VTLVDQFPGQ SIDFFGALRA RVYDDEVRKF VESLGVEKIG KRLVNSREGP PVFEQPEMTY EKLMEYGNML
401: VMEQENVKRV QLAETYLSQA ALGDANADAI GRGTFYGKTE V

Arabidopsis Description

RCARibulose bisphosphate carboxylase/oxygenase activase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P10896]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.