CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
OQU78269

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G39730.1	OQU78269	AT5G42980.1	15352244

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d048593_P001	Maize	plastid	91.59	93.07
Os11t0707000-02	Rice	plastid	80.0	81.29
TraesCS4D01G134900.1	Wheat	plastid	78.18	79.63
TraesCS4A01G177600.1	Wheat	plastid	78.18	79.63
TraesCS4B01G140200.1	Wheat	plastid	78.18	79.63
VIT_13s0019g02050.t01	Wine grape	plastid	76.36	76.71
GSMUA_Achr10P...	Banana	plastid	70.91	76.66
CDX93240	Canola	plastid	76.36	76.54
Bra017055.1-P	Field mustard	plastid	76.59	76.07
KRH31002	Soybean	nucleus, plastid	75.91	75.39
KRG97874	Soybean	plastid	75.68	75.17
GSMUA_Achr11P...	Banana	plasma membrane, plastid	74.77	75.11
PGSC0003DMT400028767	Potato	plastid	74.32	74.66
TraesCS4D01G135000.9	Wheat	plastid	77.95	73.92
TraesCS4A01G177500.1	Wheat	plastid	77.95	73.92
TraesCS4B01G140300.1	Wheat	plastid	77.73	73.71
PGSC0003DMT400049256	Potato	cytosol, plastid	72.73	73.23
HORVU4Hr1G027260.12	Barley	cytosol	77.5	73.18
EES10317	Sorghum	plastid	77.95	72.52
Solyc09g011080.2.1	Tomato	plastid	72.27	72.44
Solyc10g086580.1.1	Tomato	plastid	72.73	71.91
VIT_08s0007g00840.t01	Wine grape	plastid	77.27	71.73
GSMUA_Achr2P16450_001	Banana	plastid	76.36	70.74
CDY24950	Canola	plastid	76.36	70.74
CDY07640	Canola	plastid	76.14	70.53
CDY20474	Canola	plastid	75.0	70.51
VIT_06s0004g05180.t01	Wine grape	plastid	75.45	70.34
Bra000144.1-P	Field mustard	plastid	75.91	70.32
KRH65878	Soybean	plastid	75.68	70.25
AT2G39730.1	Thale cress	plastid	75.68	70.25
CDX74838	Canola	plastid	74.55	70.09
Bra005019.1-P	Field mustard	plastid	75.45	69.89
KRH15079	Soybean	nucleus, plastid	75.91	69.87
KRH73060	Soybean	nucleus, plastid	75.23	69.25
CDY68720	Canola	cytosol	16.36	60.0
KRH75848	Soybean	endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole	15.68	58.47
CDY21872	Canola	cytosol	16.82	57.81
KRH55240	Soybean	cytosol	10.0	53.66
OQU82488	Sorghum	plastid	42.73	43.42
PGSC0003DMT400091016	Potato	plastid	14.32	34.24

Protein Annotations

Gene3D:1.10.8.1070	MapMan:1.2.1.3.2	Gene3D:3.40.50.300	EntrezGene:8086040	InterPro:ATPase_AAA_core	UniProt:C5Y1T5
EnsemblPlants:EES10316	ProteinID:EES10316	ProteinID:EES10316.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150
GO:GO:0009536	GO:GO:0009570	GO:GO:0009579	GO:GO:0030234	GO:GO:0043085	GO:GO:0046863
InterPro:P-loop_NTPase	PFAM:PF00004	PANTHER:PTHR32429	PANTHER:PTHR32429:SF8	EnsemblPlantsGene:SORBI_3005G231500	SUPFAM:SSF52540
unigene:Sbi.9977	UniParc:UPI0001A86ACA	RefSeq:XP_002451328.1	:	:	:

Description

hypothetical protein

Coordinates

chr5:-:71754663..71757168

Molecular Weight (calculated)

48469.9 Da

IEP (calculated)

7.538

GRAVY (calculated)

-0.321

Length

440 amino acids

Sequence
(BLAST)

001: MAAAFSSTVG APASTPSRSS FLGKKLSKQQ VSAAAAVNYY HGKSSSSAAA NVNRFKVMAA KEVDETKQSD QDRWKGLAYD VSDDQQDITR GKGMIDSLFQ
101: APMGDGTHVA VLSSYDYISQ GQKTYSFDNM MDGFYISKSF MDKLVVHLSK NFMSLPNIKV PLILGIWGGK GQGKSFQCEL VFSKMGIIPI MMSAGELESG
201: NAGEPAKLIR QRYREAADLI SKGKMSCLFI NDLDAGAGRM GGTTQYTVNN QMVNATLMNI ADNPTNVQLP GMYNKVDNAR VPIIVTGNDF STLYAPLIRD
301: GRMEKFYWAP TREDRIGVCK GIFRTDGVDE EHVVQLVDTF PGQSIDFFGA LRARVYDDEV RRWVAETGVE NIAKKLVNSK EGPPTFEQPK MTIEKLLEYG
401: HMLVAEQENV KRVQLADKYL NEAALGAANE DAMKTGNFFK

Best Arabidopsis Sequence Match ( AT2G39730.3 )
(BLAST)

001: MAAAVSTVGA INRAPLSLNG SGSGAVSAPA STFLGKKVVT VSRFAQSNKK SNGSFKVLAV KEDKQTDGDR WRGLAYDTSD DQQDITRGKG MVDSVFQAPM
101: GTGTHHAVLS SYEYVSQGLR QYNLDNMMDG FYIAPAFMDK LVVHITKNFL TLPNIKVPLI LGIWGGKGQG KSFQCELVMA KMGINPIMMS AGELESGNAG
201: EPAKLIRQRY REAADLIKKG KMCCLFINDL DAGAGRMGGT TQYTVNNQMV NATLMNIADN PTNVQLPGMY NKEENARVPI ICTGNDFSTL YAPLIRDGRM
301: EKFYWAPTRE DRIGVCKGIF RTDKIKDEDI VTLVDQFPGQ SIDFFGALRA RVYDDEVRKF VESLGVEKIG KRLVNSREGP PVFEQPEMTY EKLMEYGNML
401: VMEQENVKRV QLAETYLSQA ALGDANADAI GRGTFYGKTE V

Arabidopsis Description

RCARibulose bisphosphate carboxylase/oxygenase activase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P10896]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.