CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 21417358

msms PMID: 21417358 doi

DR Demartini, R Jain, G Agrawal, JJ Thelen

Department of Biochemistry and Interdisciplinary Plant Group, Christopher S. Bond Life Sciences Center, University of Missouri, Columbia, Missouri 65211, United States.

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY32970
CDY43592

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G39730.1	CDY32970	AT5G42980.1	15352244
AT2G39730.1	CDY43592	AT5G42980.1	15352244

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra017055.1-P	Field mustard	plastid	98.63	97.74
CDY07640	Canola	plastid	96.58	89.26
CDY24950	Canola	plastid	96.13	88.84
AT2G39730.1	Thale cress	plastid	94.08	87.13
CDY20474	Canola	plastid	92.26	86.54
CDX74838	Canola	plastid	91.34	85.68
GSMUA_Achr10P...	Banana	plastid	74.03	79.85
Os11t0707000-02	Rice	plastid	78.13	79.21
GSMUA_Achr11P...	Banana	plasma membrane, plastid	78.82	79.0
TraesCS4D01G134900.1	Wheat	plastid	76.54	77.78
TraesCS4A01G177600.1	Wheat	plastid	76.54	77.78
Zm00001d048593_P001	Maize	plastid	76.54	77.6
TraesCS4B01G140200.1	Wheat	plastid	76.08	77.31
EES10316	Sorghum	plastid	76.54	76.36
CDY68720	Canola	cytosol	20.27	74.17
GSMUA_Achr2P16450_001	Banana	plastid	79.27	73.26
CDY21872	Canola	cytosol	20.73	71.09
Zm00001d048592_P001	Maize	plastid	74.26	70.41
TraesCS4B01G140300.1	Wheat	plastid	74.03	70.04
TraesCS4D01G135000.9	Wheat	plastid	74.03	70.04
TraesCS4A01G177500.1	Wheat	plastid	73.8	69.83
HORVU4Hr1G027260.12	Barley	cytosol	73.8	69.53
EES10317	Sorghum	plastid	74.03	68.71
CDY58991	Canola	cytosol	11.39	60.98
CDY59936	Canola	plastid	40.77	42.02
CDX96450	Canola	plastid	40.09	41.71
Os11t0707100-00	Rice	golgi, mitochondrion, plastid	17.31	38.0
Os11t0707050-00	Rice	cytosol, nucleus, plastid	5.69	34.72

Protein Annotations

EnsemblPlants:CDX93240	EnsemblPlantsGene:GSBRNA2T00155196001	Gene3D:1.10.8.1070	Gene3D:3.40.50.300	GO:A0A078DV80	GO:GO:0000166
GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	InterPro:ATPase_AAA_core	InterPro:P-loop_NTPase	PANTHER:PTHR32429
PANTHER:PTHR32429:SF12	PFAM:PF00004	ProteinID:CDX93240	ProteinID:CDX93240.1	SUPFAM:SSF52540	UniParc:UPI0004EDEF95
MapMan:1.2.1.3.2	:	:	:	:	:

Description

BnaC04g46560D

Coordinates

chrLK031875:+:512813..516081

Molecular Weight (calculated)

48101.8 Da

IEP (calculated)

6.566

GRAVY (calculated)

-0.281

Length

439 amino acids

Sequence
(BLAST)

001: MAAAVSTVGA INRAPLSLNG SGAGAASVPA TTFLGKKVVT ASRFAQNNKK SNGSFKVVAV KEDKQTDGDR WRGLAYDTSD DQQDITRGKG MVDSVFQAPM
101: GTGTHNAVLS SYEYLSQGLK QYNLDNMMDG LYIAPAFMDK LVVHITKNFL TLPNIKVPLI LGVWGGKGQG KSFQCELVMA KMGINPIMMS AGELESGNAG
201: EPAKLIRQRY REAADLIKKG KMCCLFINDL DAGAGRMGGT TQYTVNNQMV NATLMNIADN PTNVQLPGMY NKEDNARVPI IVTGNDFSTL YAPLIRDGRM
301: EKFYWAPTRE DRIGVCKGIF RTDNIKDEDI VTLVDQFPGQ SIDFFGALRA RVYDDEVRKF VEGLGVEKIS KRLVNSREGP PVFEQPEMTL EKLMEYGNML
401: VMEQDNVKRV QLADQYLNEA ALGDANADAI GRGTFFGQT

Best Arabidopsis Sequence Match ( AT2G39730.2 )
(BLAST)

001: MAAAVSTVGA INRAPLSLNG SGSGAVSAPA STFLGKKVVT VSRFAQSNKK SNGSFKVLAV KEDKQTDGDR WRGLAYDTSD DQQDITRGKG MVDSVFQAPM
101: GTGTHHAVLS SYEYVSQGLR QYNLDNMMDG FYIAPAFMDK LVVHITKNFL TLPNIKVPLI LGIWGGKGQG KSFQCELVMA KMGINPIMMS AGELESGNAG
201: EPAKLIRQRY REAADLIKKG KMCCLFINDL DAGAGRMGGT TQYTVNNQMV NATLMNIADN PTNVQLPGMY NKEENARVPI ICTGNDFSTL YAPLIRDGRM
301: EKFYWAPTRE DRIGVCKGIF RTDKIKDEDI VTLVDQFPGQ SIDFFGALRA RVYDDEVRKF VESLGVEKIG KRLVNSREGP PVFEQPEMTY EKLMEYGNML
401: VMEQENVKRV QLAETYLSQA ALGDANADAI GRGTFYGKTE EKEPSK

Arabidopsis Description

RCARibulose bisphosphate carboxylase/oxygenase activase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P10896]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.