CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY32970
CDY43592

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G39730.1	CDY32970	AT5G42980.1	15352244
AT2G39730.1	CDY43592	AT5G42980.1	15352244

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX74838	Canola	plastid	98.5	98.5
Bra005019.1-P	Field mustard	plastid	98.08	96.63
CDY07640	Canola	plastid	95.09	93.68
CDY24950	Canola	plastid	94.44	93.05
CDX93240	Canola	plastid	86.54	92.26
AT2G39730.1	Thale cress	plastid	92.09	90.93
Os11t0707000-02	Rice	plastid	73.72	79.68
GSMUA_Achr10P...	Banana	plastid	69.02	79.36
GSMUA_Achr2P16450_001	Banana	plastid	79.91	78.74
TraesCS4D01G134900.1	Wheat	plastid	72.65	78.7
TraesCS4A01G177600.1	Wheat	plastid	72.65	78.7
Zm00001d048592_P001	Maize	plastid	77.78	78.62
GSMUA_Achr11P...	Banana	plasma membrane, plastid	73.5	78.54
TraesCS4B01G140200.1	Wheat	plastid	72.22	78.24
TraesCS4B01G140300.1	Wheat	plastid	76.07	76.72
TraesCS4D01G135000.9	Wheat	plastid	76.07	76.72
TraesCS4A01G177500.1	Wheat	plastid	75.85	76.51
Zm00001d048593_P001	Maize	plastid	70.51	76.21
EES10317	Sorghum	plastid	76.5	75.69
EES10316	Sorghum	plastid	70.51	75.0
Os11t0707050-00	Rice	cytosol, nucleus, plastid	11.32	73.61
CDY68720	Canola	cytosol	18.59	72.5
HORVU4Hr1G027260.12	Barley	cytosol	69.44	69.74
CDY21872	Canola	cytosol	18.8	68.75
CDY58991	Canola	cytosol	10.04	57.32
CDY59936	Canola	plastid	38.03	41.78
CDX96450	Canola	plastid	37.39	41.47
Os11t0707100-00	Rice	golgi, mitochondrion, plastid	16.88	39.5

Protein Annotations

EnsemblPlants:CDY20474	EnsemblPlantsGene:GSBRNA2T00012567001	Gene3D:1.10.8.1070	Gene3D:3.40.50.300	GO:A0A078G525	GO:GO:0000166
GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	InterPro:ATPase_AAA_core	InterPro:P-loop_NTPase	PANTHER:PTHR32429
PANTHER:PTHR32429:SF8	PFAM:PF00004	ProteinID:CDY20474	ProteinID:CDY20474.1	SUPFAM:SSF52540	UniParc:UPI0004EE2214
UniProt:A0A078G525	MapMan:1.2.1.3.2	:	:	:	:

Description

BnaC04g05700DBnaC04g05700D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G525]

Coordinates

chrLK032108:-:382105..384814

Molecular Weight (calculated)

51344.6 Da

IEP (calculated)

6.567

GRAVY (calculated)

-0.330

Length

468 amino acids

Sequence
(BLAST)

001: MAAAVSPVLS LNGSGAVAAS VPATTFLGKK VVTSSRFSQS NKKSNGSSFK VVAVKEDKQT DGDRWRGLAY DTSDDQQDIT RGKGMVDSVF QAPMGTGTHN
101: AVLSSYEYIS QGLKQYNLDN MMDGLYIAPA FMDKLVVHIT KNFLTLPNIK VPLILGIWGG KGQGKSFQCE LVMAKMGINP IMMSAGELES GNAGEPAKLI
201: RQRYREAADM IKKGKMCVLF INDLDAGAGR MGGTTQYTVN NQMVNATLMN IADNPTNVQL PGMYNKEENA RVPIIVTGND FSTLYAPLIR DGRMEKFYWA
301: PTREDRIGVC KGIFRTDKIK DEDIVKLVDQ FPGQSIDFFG ALRARVYDDE VRKFVEGLGV EKIGKRLVNS REGPPKFEQP EMTLDKLMEY GNMLVMEQEN
401: VKRVQLADQY LNEAALGDAN ADAIGRGTFY GKAAQQVNLP VPEGCTDPAA KNFDPTARSD DGTCVYNF

Best Arabidopsis Sequence Match ( AT2G39730.1 )
(BLAST)

001: MAAAVSTVGA INRAPLSLNG SGSGAVSAPA STFLGKKVVT VSRFAQSNKK SNGSFKVLAV KEDKQTDGDR WRGLAYDTSD DQQDITRGKG MVDSVFQAPM
101: GTGTHHAVLS SYEYVSQGLR QYNLDNMMDG FYIAPAFMDK LVVHITKNFL TLPNIKVPLI LGIWGGKGQG KSFQCELVMA KMGINPIMMS AGELESGNAG
201: EPAKLIRQRY REAADLIKKG KMCCLFINDL DAGAGRMGGT TQYTVNNQMV NATLMNIADN PTNVQLPGMY NKEENARVPI ICTGNDFSTL YAPLIRDGRM
301: EKFYWAPTRE DRIGVCKGIF RTDKIKDEDI VTLVDQFPGQ SIDFFGALRA RVYDDEVRKF VESLGVEKIG KRLVNSREGP PVFEQPEMTY EKLMEYGNML
401: VMEQENVKRV QLAETYLSQA ALGDANADAI GRGTFYGKGA QQVNLPVPEG CTDPVAENFD PTARSDDGTC VYNF

Arabidopsis Description

RCARibulose bisphosphate carboxylase/oxygenase activase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P10896]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.