CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY68720	Canola	cytosol	87.5	93.33
CDY58991	Canola	cytosol	37.5	58.54
Os11t0707050-00	Rice	cytosol, nucleus, plastid	11.72	20.83
CDX93240	Canola	plastid	71.09	20.73
CDX74838	Canola	plastid	68.75	18.8
CDY20474	Canola	plastid	68.75	18.8
CDY07640	Canola	plastid	68.75	18.53
CDY24950	Canola	plastid	68.75	18.53
TraesCS4D01G134900.1	Wheat	plastid	60.94	18.06
TraesCS4B01G140200.1	Wheat	plastid	60.94	18.06
TraesCS4A01G177600.1	Wheat	plastid	60.94	18.06
Os11t0707000-02	Rice	plastid	60.16	17.78
GSMUA_Achr11P...	Banana	plasma membrane, plastid	57.81	16.89
EES10316	Sorghum	plastid	57.81	16.82
Zm00001d048593_P001	Maize	plastid	56.25	16.63
Zm00001d048592_P001	Maize	plastid	58.59	16.2
GSMUA_Achr2P16450_001	Banana	plastid	58.59	15.79
EES10317	Sorghum	plastid	56.25	15.22
TraesCS4B01G140300.1	Wheat	plastid	53.91	14.87
TraesCS4A01G177500.1	Wheat	plastid	53.12	14.66
TraesCS4D01G135000.9	Wheat	plastid	53.12	14.66
HORVU4Hr1G027260.12	Barley	cytosol	53.12	14.59
GSMUA_Achr10P...	Banana	plastid	40.62	12.78
CDX96450	Canola	plastid	28.91	8.77
CDY59936	Canola	plastid	28.91	8.69
Os11t0707100-00	Rice	golgi, mitochondrion, plastid	10.16	6.5

Protein Annotations

EnsemblPlants:CDY21872	EnsemblPlantsGene:GSBRNA2T00018177001	Gene3D:1.10.8.1070	PANTHER:PTHR32429	PANTHER:PTHR32429:SF8	ProteinID:CDY21872
ProteinID:CDY21872.1	UniParc:UPI0004EF056B	UniProt:A0A078GA26	MapMan:35.1	:	:

Description

BnaC01g35760DBnaC01g35760D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GA26]

Coordinates

chrLK032125:+:420536..421095

Molecular Weight (calculated)

15000.3 Da

IEP (calculated)

8.059

GRAVY (calculated)

-0.547

Length

128 amino acids

Sequence
(BLAST)

001: MEKFYWAPTR EDRIGVCKGI FRTDKIKDED IVTLVDQFPG QSIGVEKISK RLVNSREGPP VFEQPEMTLE KLMEYGNMLV MEQENVKRVR QESPTSLCNL
101: RCRPRLVDLH RGDGNHIRTF ELIKLFMT

Best Arabidopsis Sequence Match ( AT2G39730.1 )
(BLAST)

001: MAAAVSTVGA INRAPLSLNG SGSGAVSAPA STFLGKKVVT VSRFAQSNKK SNGSFKVLAV KEDKQTDGDR WRGLAYDTSD DQQDITRGKG MVDSVFQAPM
101: GTGTHHAVLS SYEYVSQGLR QYNLDNMMDG FYIAPAFMDK LVVHITKNFL TLPNIKVPLI LGIWGGKGQG KSFQCELVMA KMGINPIMMS AGELESGNAG
201: EPAKLIRQRY REAADLIKKG KMCCLFINDL DAGAGRMGGT TQYTVNNQMV NATLMNIADN PTNVQLPGMY NKEENARVPI ICTGNDFSTL YAPLIRDGRM
301: EKFYWAPTRE DRIGVCKGIF RTDKIKDEDI VTLVDQFPGQ SIDFFGALRA RVYDDEVRKF VESLGVEKIG KRLVNSREGP PVFEQPEMTY EKLMEYGNML
401: VMEQENVKRV QLAETYLSQA ALGDANADAI GRGTFYGKGA QQVNLPVPEG CTDPVAENFD PTARSDDGTC VYNF

Arabidopsis Description

RCARibulose bisphosphate carboxylase/oxygenase activase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P10896]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.