CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 21417358

msms PMID: 21417358 doi

DR Demartini, R Jain, G Agrawal, JJ Thelen

Department of Biochemistry and Interdisciplinary Plant Group, Christopher S. Bond Life Sciences Center, University of Missouri, Columbia, Missouri 65211, United States.

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY32970
CDY43592

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G39730.1	CDY32970	AT5G42980.1	15352244
AT2G39730.1	CDY43592	AT5G42980.1	15352244

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY24950	Canola	plastid	99.37	99.37
Bra000144.1-P	Field mustard	plastid	98.95	98.95
CDX93240	Canola	plastid	89.26	96.58
CDY20474	Canola	plastid	93.68	95.09
AT2G39730.1	Thale cress	plastid	94.11	94.3
CDX74838	Canola	plastid	92.63	94.02
GSMUA_Achr10P...	Banana	plastid	69.89	81.57
GSMUA_Achr2P16450_001	Banana	plastid	80.42	80.42
GSMUA_Achr11P...	Banana	plasma membrane, plastid	74.11	80.37
Os11t0707000-02	Rice	plastid	72.63	79.68
TraesCS4D01G134900.1	Wheat	plastid	72.21	79.4
TraesCS4A01G177600.1	Wheat	plastid	72.21	79.4
TraesCS4B01G140200.1	Wheat	plastid	71.79	78.94
Zm00001d048592_P001	Maize	plastid	76.21	78.19
Zm00001d048593_P001	Maize	plastid	70.74	77.6
TraesCS4D01G135000.9	Wheat	plastid	74.74	76.51
TraesCS4B01G140300.1	Wheat	plastid	74.74	76.51
TraesCS4A01G177500.1	Wheat	plastid	74.53	76.29
EES10316	Sorghum	plastid	70.53	76.14
EES10317	Sorghum	plastid	75.37	75.69
Os11t0707050-00	Rice	cytosol, nucleus, plastid	11.16	73.61
CDY68720	Canola	cytosol	18.32	72.5
HORVU4Hr1G027260.12	Barley	cytosol	68.84	70.17
CDY21872	Canola	cytosol	18.53	68.75
CDY58991	Canola	cytosol	10.11	58.54
CDY59936	Canola	plastid	37.05	41.31
CDX96450	Canola	plastid	36.42	41.0
Os11t0707100-00	Rice	golgi, mitochondrion, plastid	16.42	39.0

Protein Annotations

EnsemblPlants:CDY07640	EnsemblPlantsGene:GSBRNA2T00124746001	Gene3D:1.10.8.1070	Gene3D:3.40.50.300	GO:A0A078EZW2	GO:GO:0000166
GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	InterPro:ATPase_AAA_core	InterPro:P-loop_NTPase	PANTHER:PTHR32429
PANTHER:PTHR32429:SF12	PFAM:PF00004	ProteinID:CDY07640	ProteinID:CDY07640.1	SUPFAM:SSF52540	UniParc:UPI0004EECDC5
UniProt:A0A078EZW2	MapMan:1.2.1.3.2	:	:	:	:

Description

BnaA03g18710DBnaA03g18710D protein [Source:UniProtKB/TrEMBL;Acc:A0A078EZW2]

Coordinates

chrLK031980:+:245482..248131

Molecular Weight (calculated)

51931.1 Da

IEP (calculated)

5.394

GRAVY (calculated)

-0.315

Length

475 amino acids

Sequence
(BLAST)

001: MAAAVSTVGA INRAPLSLNG SGAGAASVPA TTFLGKKVVT ASRFTQSNNK KSNGSFKVVA VKEDKQTDGD RWRGLAYDTS DDQQDITRGK GMVDSVFQAP
101: MGTGTHNAVL SSYEYISQGL KQYNLDNMMD GLYIAPAFMD KLVVHITKNF LTLPNIKVPL ILGIWGGKGQ GKSFQCELVM AKMGINPIMM SAGELESGNA
201: GEPAKLIRQR YREAADMIKK GKMCCLFIND LDAGAGRMGG TTQYTVNNQM VNATLMNIAD NPTNVQLPGM YNKEENARVP IIVTGNDFST LYAPLIRDGR
301: MEKFYWAPTR EDRIGVCKGI FRTDNVKDED IVTLVDQFPG QSIDFFGALR ARVYDDEVRK FVEGLGVEKI GKRLVNSREG PPVFEQPAMT LEKLMEYGNM
401: LVMEQENVKR VQLADQYLNE AALGDANADA IGRGTFYGKA AQQVNLPVPE GCTDPQADNF DPTARSDDGT CVYNF

Best Arabidopsis Sequence Match ( AT2G39730.1 )
(BLAST)

001: MAAAVSTVGA INRAPLSLNG SGSGAVSAPA STFLGKKVVT VSRFAQSNKK SNGSFKVLAV KEDKQTDGDR WRGLAYDTSD DQQDITRGKG MVDSVFQAPM
101: GTGTHHAVLS SYEYVSQGLR QYNLDNMMDG FYIAPAFMDK LVVHITKNFL TLPNIKVPLI LGIWGGKGQG KSFQCELVMA KMGINPIMMS AGELESGNAG
201: EPAKLIRQRY REAADLIKKG KMCCLFINDL DAGAGRMGGT TQYTVNNQMV NATLMNIADN PTNVQLPGMY NKEENARVPI ICTGNDFSTL YAPLIRDGRM
301: EKFYWAPTRE DRIGVCKGIF RTDKIKDEDI VTLVDQFPGQ SIDFFGALRA RVYDDEVRKF VESLGVEKIG KRLVNSREGP PVFEQPEMTY EKLMEYGNML
401: VMEQENVKRV QLAETYLSQA ALGDANADAI GRGTFYGKGA QQVNLPVPEG CTDPVAENFD PTARSDDGTC VYNF

Arabidopsis Description

RCARibulose bisphosphate carboxylase/oxygenase activase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P10896]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.