Factsheet for Zm00001d048593_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 22065420
plastid: 23198870

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d038652_P003

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G39730.1	Zm00001d038652_P003	AT5G42980.1	15352244

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES10316	Sorghum	plastid	93.07	91.59
Os11t0707000-02	Rice	plastid	81.99	81.99
TraesCS4A01G177600.1	Wheat	plastid	80.37	80.56
TraesCS4D01G134900.1	Wheat	plastid	80.37	80.56
TraesCS4B01G140200.1	Wheat	plastid	80.14	80.32
GSMUA_Achr10P...	Banana	plastid	72.52	77.15
KRH31002	Soybean	nucleus, plastid	78.75	76.98
KRG97874	Soybean	plastid	78.52	76.75
VIT_13s0019g02050.t01	Wine grape	plastid	77.6	76.71
CDX93240	Canola	plastid	77.6	76.54
Bra017055.1-P	Field mustard	plastid	77.83	76.07
GSMUA_Achr11P...	Banana	plasma membrane, plastid	76.67	75.8
TraesCS4A01G177500.1	Wheat	plastid	79.91	74.57
PGSC0003DMT400028767	Potato	plastid	75.29	74.43
TraesCS4B01G140300.1	Wheat	plastid	79.68	74.35
TraesCS4D01G135000.9	Wheat	plastid	79.68	74.35
HORVU4Hr1G027260.12	Barley	cytosol	79.21	73.61
Solyc09g011080.2.1	Tomato	plastid	73.9	72.89
PGSC0003DMT400049256	Potato	cytosol, plastid	73.44	72.77
VIT_08s0007g00840.t01	Wine grape	plastid	78.75	71.94
Solyc10g086580.1.1	Tomato	plastid	73.9	71.91
Zm00001d048592_P001	Maize	plastid	76.44	71.49
CDY24950	Canola	plastid	77.83	70.95
KRH65878	Soybean	plastid	77.6	70.89
GSMUA_Achr2P16450_001	Banana	plastid	77.6	70.74
CDY07640	Canola	plastid	77.6	70.74
CDY20474	Canola	plastid	76.21	70.51
KRH73060	Soybean	nucleus, plastid	77.83	70.5
KRH15079	Soybean	nucleus, plastid	77.83	70.5
VIT_06s0004g05180.t01	Wine grape	plastid	76.67	70.34
AT2G39730.1	Thale cress	plastid	76.91	70.25
Bra005019.1-P	Field mustard	plastid	76.91	70.11
Bra000144.1-P	Field mustard	plastid	76.91	70.11
CDX74838	Canola	plastid	75.75	70.09
CDY68720	Canola	cytosol	16.17	58.33
KRH75848	Soybean	endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole	15.7	57.63
CDY21872	Canola	cytosol	16.63	56.25
KRH55240	Soybean	cytosol	9.93	52.44
Zm00001d001995_P003	Maize	plastid	44.34	41.74
PGSC0003DMT400091016	Potato	plastid	14.55	34.24

Protein Annotations

Gene3D:1.10.8.1070	MapMan:1.2.1.3.2	Gene3D:3.40.50.300	EntrezGene:541712	EMBL:AB564720	EMBL:AF084478
ProteinID:AGM53308.1	ProteinID:AGM53309.1	ProteinID:AGM53310.1	ProteinID:AQK48231.1	InterPro:ATPase_AAA_core	UniProt:B6T416
EMBL:EU959731	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0009507	GO:GO:0009536
GO:GO:0009570	GO:GO:0016829	GO:GO:0016984	InterPro:P-loop_NTPase	PFAM:PF00004	PANTHER:PTHR32429
PANTHER:PTHR32429:SF8	UniProt:Q9ZT00	SUPFAM:SSF52540	UniParc:UPI00000010B9	EnsemblPlantsGene:Zm00001d048593	EnsemblPlants:Zm00001d048593_P001
EnsemblPlants:Zm00001d048593_T001	:	:	:	:	:

Description

RUBISCO activase2 RUBISCO activase2

Coordinates

chr4:+:921608..923738

Molecular Weight (calculated)

47941.2 Da

IEP (calculated)

6.692

GRAVY (calculated)

-0.401

Length

433 amino acids

Sequence
(BLAST)

001: MAAAFSSTVG APASTPTRSS FLGKKLNKPQ VSAAVTYHGK SSSSNSRFKA MAAKEVDETK QTDEDRWKGL AYDISDDQQD ITRGKGLVDN LFQAPMGDGT
101: HVAVLSSYDY ISQGQKSYNF DNMMDGFYIA KGFMDKLVVH LSKNFMTLPN IKVPLILGIW GGKGQGKSFQ CELVFAKMGI TPIMMSAGEL ESGNAGEPAK
201: LIRQRYREAS DLIKKGKMSC LFINDLDAGA GRMGGTTQYT VNNQMVNATL MNIADNPTNV QLPGMYNKED NPRVPIIVTG NDFSTLYAPL IRDGRMEKFY
301: WAPTREDRIG VCKGIFRTDG VDEEHVVQLV DTFPGQSIDF FGALRARVYD DEVRRWVSET GVENIARKLV NSKEGPPTFE QPKITIEKLL EYGHMLVAEQ
401: ENVKRVQLAD KYLNEAALGE ANEDAMKTGS FFK

Best Arabidopsis Sequence Match ( AT2G39730.2 )
(BLAST)

001: MAAAVSTVGA INRAPLSLNG SGSGAVSAPA STFLGKKVVT VSRFAQSNKK SNGSFKVLAV KEDKQTDGDR WRGLAYDTSD DQQDITRGKG MVDSVFQAPM
101: GTGTHHAVLS SYEYVSQGLR QYNLDNMMDG FYIAPAFMDK LVVHITKNFL TLPNIKVPLI LGIWGGKGQG KSFQCELVMA KMGINPIMMS AGELESGNAG
201: EPAKLIRQRY REAADLIKKG KMCCLFINDL DAGAGRMGGT TQYTVNNQMV NATLMNIADN PTNVQLPGMY NKEENARVPI ICTGNDFSTL YAPLIRDGRM
301: EKFYWAPTRE DRIGVCKGIF RTDKIKDEDI VTLVDQFPGQ SIDFFGALRA RVYDDEVRKF VESLGVEKIG KRLVNSREGP PVFEQPEMTY EKLMEYGNML
401: VMEQENVKRV QLAETYLSQA ALGDANADAI GRGTFYGKTE EKEPSK

Arabidopsis Description

RCARibulose bisphosphate carboxylase/oxygenase activase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P10896]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.