Factsheet for VIT_08s0007g00840.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_06s0004g05180.t01	Wine grape	plastid	88.4	88.77
VIT_13s0019g02050.t01	Wine grape	plastid	81.86	88.58
GSMUA_Achr11P...	Banana	plasma membrane, plastid	79.11	85.62
GSMUA_Achr10P...	Banana	plastid	73.42	85.5
KRH65878	Soybean	plastid	85.23	85.23
GSMUA_Achr2P16450_001	Banana	plastid	84.81	84.63
Bra005019.1-P	Field mustard	plastid	82.28	82.11
AT2G39730.1	Thale cress	plastid	81.65	81.65
Bra000144.1-P	Field mustard	plastid	81.01	80.84
Bra017055.1-P	Field mustard	plastid	75.32	80.59
Os11t0707000-02	Rice	plastid	73.0	79.91
Zm00001d048593_P001	Maize	plastid	71.94	78.75
TraesCS4A01G177600.1	Wheat	plastid	71.73	78.7
TraesCS4B01G140200.1	Wheat	plastid	71.73	78.7
TraesCS4D01G134900.1	Wheat	plastid	71.73	78.7
TraesCS4A01G177500.1	Wheat	plastid	76.58	78.23
TraesCS4B01G140300.1	Wheat	plastid	76.37	78.02
TraesCS4D01G135000.9	Wheat	plastid	76.37	78.02
EES10316	Sorghum	plastid	71.73	77.27
Zm00001d048592_P001	Maize	plastid	75.11	76.89
Os11t0707050-00	Rice	cytosol, nucleus, plastid	11.6	76.39
EES10317	Sorghum	plastid	75.32	75.48
HORVU4Hr1G027260.12	Barley	cytosol	70.68	71.89
VIT_09s0018g01270.t01	Wine grape	extracellular	33.33	54.86
Os11t0707100-00	Rice	golgi, mitochondrion, plastid	16.88	40.0

Protein Annotations

Gene3D:1.10.8.1070	MapMan:1.2.1.3.2	EntrezGene:100256315	wikigene:100256315	Gene3D:3.40.50.300	InterPro:ATPase_AAA_core
ProteinID:CBI30513	ProteinID:CBI30513.3	UniProt:D7THJ7	EMBL:FN595991	GO:GO:0000166	GO:GO:0003674
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0008150	GO:GO:0009536	GO:GO:0009570	GO:GO:0009579	GO:GO:0030234	GO:GO:0043085
GO:GO:0046863	EntrezGene:LOC100256315	wikigene:LOC100256315	InterPro:P-loop_NTPase	PFAM:PF00004	PANTHER:PTHR32429
PANTHER:PTHR32429:SF12	SUPFAM:SSF52540	TIGR:TC60032	TIGR:TC61607	UniParc:UPI00015C929A	ArrayExpress:VIT_08s0007g00840
EnsemblPlantsGene:VIT_08s0007g00840	EnsemblPlants:VIT_08s0007g00840.t01	unigene:Vvi.7284	RefSeq:XP_002270571	RefSeq:XP_002270571.2	:

Description

No Description!

Coordinates

chr8:-:15008406..15011421

Molecular Weight (calculated)

51883.9 Da

IEP (calculated)

5.612

GRAVY (calculated)

-0.346

Length

474 amino acids

Sequence
(BLAST)

001: MAATISTLGA VNRAPLNLNG SGTGASVPSS AFLGNSLKKV SSKIAHPRTS SGNFKVVAEV DEEKQTSKDK WKGLAFDESD DQQDITRGKG MVDSLFQAPM
101: DSGTHYAVMS SYDYISTGLR QYNLDNTMDG FYIAPAFMDK LVVHITKNFM TLPNIKVPLI LGIWGGKGQG KSFQCELVFA KMGINPIMMS AGELESGNAG
201: EPAKLIRQRY REAADIIRKG KMCCLFINDL DAGAGRLGGT TQYTVNNQMV NATLMNIADN PTNVQLPGMY NKEENPRVPI IVTGNDFSTL YAPLIRDGRM
301: EKFYWAPTRE DRIGVCTGIF RSDNIPKEDM VKLVDTFPGQ SIDFFGALRA RVYDDEVRKW VASVGVEGIG KKLVNSKEGP PTFEKPKMTL DKLLEYGNML
401: VQEQENVKRV QLADKYLSEA ALGDANEDAI KSGSFYGKAA QQVNLPVPEG CTDPSANNFD PTARSDDGSC LYQI

Best Arabidopsis Sequence Match ( AT2G39730.1 )
(BLAST)

001: MAAAVSTVGA INRAPLSLNG SGSGAVSAPA STFLGKKVVT VSRFAQSNKK SNGSFKVLAV KEDKQTDGDR WRGLAYDTSD DQQDITRGKG MVDSVFQAPM
101: GTGTHHAVLS SYEYVSQGLR QYNLDNMMDG FYIAPAFMDK LVVHITKNFL TLPNIKVPLI LGIWGGKGQG KSFQCELVMA KMGINPIMMS AGELESGNAG
201: EPAKLIRQRY REAADLIKKG KMCCLFINDL DAGAGRMGGT TQYTVNNQMV NATLMNIADN PTNVQLPGMY NKEENARVPI ICTGNDFSTL YAPLIRDGRM
301: EKFYWAPTRE DRIGVCKGIF RTDKIKDEDI VTLVDQFPGQ SIDFFGALRA RVYDDEVRKF VESLGVEKIG KRLVNSREGP PVFEQPEMTY EKLMEYGNML
401: VMEQENVKRV QLAETYLSQA ALGDANADAI GRGTFYGKGA QQVNLPVPEG CTDPVAENFD PTARSDDGTC VYNF

Arabidopsis Description

RCARibulose bisphosphate carboxylase/oxygenase activase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P10896]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.