Factsheet for GSMUA_Achr11P24320_001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, plastid

Predictor Summary:

plastid 9
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plasma membrane: 21334471

msms PMID: 21334471 doi

A Vertommen, AL Møller, JH Cordewener, R Swennen, B Panis, C Finnie, AH America, SC Carpentier

Laboratory of Tropical Crop Improvement, Department of Biosystems, K.U. Leuven, Kasteelpark Arenberg 13, PO box 2455, B-3001 Heverlee, Belgium.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	plastid	86.3	92.87
VIT_13s0019g02050.t01	Wine grape	plastid	84.02	84.02
GSMUA_Achr2P16450_001	Banana	plastid	90.64	83.58
KRG97874	Soybean	plastid	82.19	81.26
KRH31002	Soybean	nucleus, plastid	81.74	80.81
Os11t0707000-02	Rice	plastid	79.68	80.6
VIT_08s0007g00840.t01	Wine grape	plastid	85.62	79.11
CDX93240	Canola	plastid	79.0	78.82
Solyc09g011080.2.1	Tomato	plastid	79.0	78.82
PGSC0003DMT400028767	Potato	plastid	78.54	78.54
TraesCS4D01G134900.1	Wheat	plastid	77.17	78.24
TraesCS4B01G140200.1	Wheat	plastid	77.17	78.24
TraesCS4A01G177600.1	Wheat	plastid	77.17	78.24
Bra017055.1-P	Field mustard	plastid	79.0	78.1
PGSC0003DMT400049256	Potato	cytosol, plastid	77.4	77.57
VIT_06s0004g05180.t01	Wine grape	plastid	83.56	77.54
Zm00001d048593_P001	Maize	plastid	75.8	76.67
KRH15079	Soybean	nucleus, plastid	83.33	76.36
KRH65878	Soybean	plastid	82.42	76.16
KRH73060	Soybean	nucleus, plastid	83.11	76.15
Solyc10g086580.1.1	Tomato	plastid	77.17	75.96
EES10316	Sorghum	plastid	75.11	74.77
CDY07640	Canola	plastid	80.37	74.11
CDY24950	Canola	plastid	80.37	74.11
CDY20474	Canola	plastid	78.54	73.5
Bra005019.1-P	Field mustard	plastid	79.68	73.47
AT2G39730.1	Thale cress	plastid	79.45	73.42
CDX74838	Canola	plastid	78.31	73.29
Bra000144.1-P	Field mustard	plastid	79.22	73.05
TraesCS4A01G177500.1	Wheat	plastid	75.57	71.34
TraesCS4B01G140300.1	Wheat	plastid	75.57	71.34
TraesCS4D01G135000.9	Wheat	plastid	75.34	71.12
HORVU4Hr1G027260.12	Barley	cytosol	75.11	70.6
Zm00001d048592_P001	Maize	plastid	72.6	68.68
EES10317	Sorghum	plastid	73.74	68.29
KRH75848	Soybean	endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole	16.44	61.02
CDY68720	Canola	cytosol	16.67	60.83
CDY21872	Canola	cytosol	16.89	57.81
KRH55240	Soybean	cytosol	10.27	54.88
GSMUA_Achr10P...	Banana	plastid	40.64	42.38
Os11t0707100-00	Rice	golgi, mitochondrion, plastid	18.04	39.5
Os11t0707050-00	Rice	cytosol, nucleus, plastid	6.39	38.89
PGSC0003DMT400091016	Potato	plastid	14.16	33.7

Protein Annotations

EnsemblPlants:GSMUA_Achr11P24320_001	EnsemblPlants:GSMUA_Achr11T24320_001	EnsemblPlantsGene:GSMUA_Achr11G24320_001	Gene3D:1.10.8.1070	Gene3D:3.40.50.300	GO:GO:0000166
GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	InterPro:ATPase_AAA_core	InterPro:P-loop_NTPase	PANTHER:PTHR32429
PANTHER:PTHR32429:SF12	PFAM:PF00004	SEG:seg	SUPFAM:SSF52540	UniParc:UPI00029579A7	UniProt:M0RV12
MapMan:1.2.1.3.2	:	:	:	:	:

Description

Ribulose bisphosphate carboxylase/oxygenase activase 2, chloroplastic [Source:GMGC_GENE;Acc:GSMUA_Achr11G24320_001]

Coordinates

chr11:+:23924676..23926655

Molecular Weight (calculated)

47821.2 Da

IEP (calculated)

6.930

GRAVY (calculated)

-0.277

Length

438 amino acids

Sequence
(BLAST)

001: MAAAVSTVGA VNRVPLSLHG SSSGAPVPSS AFFGSSLKKV NSGPSHGRNS TATFKVLAAD LDESKQTSKD KWSGLAYDVS DDQQDITRGK GLVDSLFQAP
101: MGDGTHIPVM TSYEYISQGL RQYNLDNTKD GFYIAPAFMD KLVVHITKNF MALPNIKVPL ILGVWGGKGQ GKSFQCELVF AKMGINPIMM SAGELESGNA
201: GEPAKLIRQR YREAADIIKK GKMCCLFIND LDAGAGRLGG TTQYTVNNQM VNATLMNIAD NPTNVQLPGM YNKQENPRVP IIVTGNDFST LYAPLIRDGR
301: MEKFYWAPTR DDRIGVCTGI FRTDNVPTED IVKLVDSFPG QSIDFFGALR ARVYDDEVRK WVGDIGVDKV GKKLVNSLEG PPTFEQPKMS LDTLMEYGNM
401: LVKEQENVKR VQLADKYLSE AALGDANADA MKTGSFYQ

Best Arabidopsis Sequence Match ( AT2G39730.2 )
(BLAST)

001: MAAAVSTVGA INRAPLSLNG SGSGAVSAPA STFLGKKVVT VSRFAQSNKK SNGSFKVLAV KEDKQTDGDR WRGLAYDTSD DQQDITRGKG MVDSVFQAPM
101: GTGTHHAVLS SYEYVSQGLR QYNLDNMMDG FYIAPAFMDK LVVHITKNFL TLPNIKVPLI LGIWGGKGQG KSFQCELVMA KMGINPIMMS AGELESGNAG
201: EPAKLIRQRY REAADLIKKG KMCCLFINDL DAGAGRMGGT TQYTVNNQMV NATLMNIADN PTNVQLPGMY NKEENARVPI ICTGNDFSTL YAPLIRDGRM
301: EKFYWAPTRE DRIGVCKGIF RTDKIKDEDI VTLVDQFPGQ SIDFFGALRA RVYDDEVRKF VESLGVEKIG KRLVNSREGP PVFEQPEMTY EKLMEYGNML
401: VMEQENVKRV QLAETYLSQA ALGDANADAI GRGTFYGKTE EKEPSK

Arabidopsis Description

RCARibulose bisphosphate carboxylase/oxygenase activase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P10896]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.