Factsheet for VIT_06s0004g05180.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH15079	Soybean	nucleus, plastid	89.62	88.49
VIT_08s0007g00840.t01	Wine grape	plastid	88.77	88.4
VIT_13s0019g02050.t01	Wine grape	plastid	81.99	88.36
KRH73060	Soybean	nucleus, plastid	89.41	88.28
KRH31002	Soybean	nucleus, plastid	81.14	86.46
KRG97874	Soybean	plastid	80.72	86.0
GSMUA_Achr11P...	Banana	plasma membrane, plastid	77.54	83.56
GSMUA_Achr10P...	Banana	plastid	72.03	83.54
GSMUA_Achr2P16450_001	Banana	plastid	83.9	83.37
Solyc09g011080.2.1	Tomato	plastid	75.85	81.55
Bra000144.1-P	Field mustard	plastid	81.57	81.05
AT2G39730.1	Thale cress	plastid	81.36	81.01
Bra005019.1-P	Field mustard	plastid	81.14	80.63
Bra017055.1-P	Field mustard	plastid	75.64	80.59
Os11t0707000-02	Rice	plastid	73.31	79.91
TraesCS4D01G134900.1	Wheat	plastid	71.19	77.78
TraesCS4B01G140200.1	Wheat	plastid	71.19	77.78
TraesCS4A01G177600.1	Wheat	plastid	71.19	77.78
Solyc10g086580.1.1	Tomato	plastid	73.09	77.53
Zm00001d048593_P001	Maize	plastid	70.34	76.67
TraesCS4D01G135000.9	Wheat	plastid	75.21	76.51
Os11t0707050-00	Rice	cytosol, nucleus, plastid	11.65	76.39
TraesCS4A01G177500.1	Wheat	plastid	75.0	76.29
TraesCS4B01G140300.1	Wheat	plastid	74.58	75.86
EES10316	Sorghum	plastid	70.34	75.45
Zm00001d048592_P001	Maize	plastid	73.94	75.38
EES10317	Sorghum	plastid	73.94	73.78
KRH75848	Soybean	endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole	18.22	72.88
HORVU4Hr1G027260.12	Barley	cytosol	69.92	70.82
KRH55240	Soybean	cytosol	11.02	63.41
VIT_09s0018g01270.t01	Wine grape	extracellular	33.05	54.17
CDY58991	Canola	cytosol	8.47	48.78
Os11t0707100-00	Rice	golgi, mitochondrion, plastid	16.31	38.5
PGSC0003DMT400091016	Potato	plastid	13.98	35.87

Protein Annotations

Gene3D:1.10.8.1070	MapMan:1.2.1.3.2	EntrezGene:100263871	wikigene:100263871	Gene3D:3.40.50.300	EMBL:AM480727
InterPro:ATPase_AAA_core	ProteinID:CAN83893	ProteinID:CAN83893.1	ProteinID:CBI16088	ProteinID:CBI16088.3	UniProt:D7SKB2
EMBL:FN594951	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0009536	GO:GO:0009570
GO:GO:0009579	GO:GO:0030234	GO:GO:0043085	GO:GO:0046863	EntrezGene:LOC100263871	wikigene:LOC100263871
InterPro:P-loop_NTPase	PFAM:PF00004	PANTHER:PTHR32429	PANTHER:PTHR32429:SF12	SUPFAM:SSF52540	TIGR:TC53083
TIGR:TC53749	UniParc:UPI00015C81C1	ArrayExpress:VIT_06s0004g05180	EnsemblPlantsGene:VIT_06s0004g05180	EnsemblPlants:VIT_06s0004g05180.t01	unigene:Vvi.11359
RefSeq:XP_002282236	RefSeq:XP_002282236.1	RefSeq:XP_003632187	RefSeq:XP_003632187.1	:	:

Description

No Description!

Coordinates

chr6:-:6106696..6109243

Molecular Weight (calculated)

51887.8 Da

IEP (calculated)

5.384

GRAVY (calculated)

-0.330

Length

472 amino acids

Sequence
(BLAST)

001: MATTVSTIGA VNRTPLSLNS SGTGASVPSS AFFGSSLKKV SSRFTHPKIA SGSFKVVAEI DENEQTEKDR WKGLAYDVSD DQQDITRGKG MVDSLFQAPM
101: QSGTHYAVMS SYEYLSTGLR QYNLDNNMDG FYIAPAFMDK LVVHITKNFM TLPNIKVPLI LGIWGGKGQG KSFQCELVFS KMGINPIMMS AGELESGNAG
201: EPAKLIRQRY REAADIIRKG KMCCLFINDL DAGAGRLGGT TQYTVNNQMV NATLMNIADN PTNVQLPGMY NKEENPRVPI IVTGNDFSTL YAPLIRDGRM
301: EKFYWAPNRE DRIGVCKGIF RSDNVPDDDI VKIVDTFPGQ SIDFFGALRA RVYDDEVRKW ISGVGVDFIG KKLVNSKEGP PTFEQPKMTI EKLLEYGNML
401: VMEQENVKRV QLADKYLSEA ALGDANVDSI ERGTFYGKAA QQVGVPVPEG CTDPSAANFD PTARSDNGSC QY

Best Arabidopsis Sequence Match ( AT2G39730.1 )
(BLAST)

001: MAAAVSTVGA INRAPLSLNG SGSGAVSAPA STFLGKKVVT VSRFAQSNKK SNGSFKVLAV KEDKQTDGDR WRGLAYDTSD DQQDITRGKG MVDSVFQAPM
101: GTGTHHAVLS SYEYVSQGLR QYNLDNMMDG FYIAPAFMDK LVVHITKNFL TLPNIKVPLI LGIWGGKGQG KSFQCELVMA KMGINPIMMS AGELESGNAG
201: EPAKLIRQRY REAADLIKKG KMCCLFINDL DAGAGRMGGT TQYTVNNQMV NATLMNIADN PTNVQLPGMY NKEENARVPI ICTGNDFSTL YAPLIRDGRM
301: EKFYWAPTRE DRIGVCKGIF RTDKIKDEDI VTLVDQFPGQ SIDFFGALRA RVYDDEVRKF VESLGVEKIG KRLVNSREGP PVFEQPEMTY EKLMEYGNML
401: VMEQENVKRV QLAETYLSQA ALGDANADAI GRGTFYGKGA QQVNLPVPEG CTDPVAENFD PTARSDDGTC VYNF

Arabidopsis Description

RCARibulose bisphosphate carboxylase/oxygenase activase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P10896]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.