CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 10
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG97874	Soybean	plastid	94.81	94.81
KRH73060	Soybean	nucleus, plastid	89.84	83.26
KRH15079	Soybean	nucleus, plastid	88.94	82.43
GSMUA_Achr11P...	Banana	plasma membrane, plastid	80.81	81.74
VIT_06s0004g05180.t01	Wine grape	plastid	86.46	81.14
GSMUA_Achr10P...	Banana	plastid	74.04	80.59
Bra017055.1-P	Field mustard	plastid	79.46	79.46
Solyc09g011080.2.1	Tomato	plastid	78.33	79.04
Zm00001d048593_P001	Maize	plastid	76.98	78.75
Os11t0707000-02	Rice	plastid	76.75	78.52
Solyc10g086580.1.1	Tomato	plastid	77.65	77.3
TraesCS4D01G134900.1	Wheat	plastid	74.94	76.85
TraesCS4A01G177600.1	Wheat	plastid	74.94	76.85
TraesCS4B01G140200.1	Wheat	plastid	74.49	76.39
KRH65878	Soybean	plastid	81.72	76.37
EES10316	Sorghum	plastid	75.39	75.91
AT2G39730.1	Thale cress	plastid	79.68	74.47
GSMUA_Achr2P16450_001	Banana	plastid	79.68	74.32
Bra005019.1-P	Field mustard	plastid	79.23	73.89
Bra000144.1-P	Field mustard	plastid	78.33	73.05
TraesCS4D01G135000.9	Wheat	plastid	74.72	71.34
HORVU4Hr1G027260.12	Barley	cytosol	74.94	71.24
TraesCS4A01G177500.1	Wheat	plastid	74.49	71.12
TraesCS4B01G140300.1	Wheat	plastid	74.04	70.69
KRH75848	Soybean	endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole	18.28	68.64
Zm00001d048592_P001	Maize	plastid	71.11	68.03
EES10317	Sorghum	plastid	71.78	67.23
KRH55240	Soybean	cytosol	11.74	63.41
CDY58991	Canola	cytosol	8.8	47.56
KRH23699	Soybean	plastid	40.63	42.06
Os11t0707100-00	Rice	golgi, mitochondrion, plastid	17.16	38.0
PGSC0003DMT400091016	Potato	plastid	14.9	35.87
Os11t0707050-00	Rice	cytosol, nucleus, plastid	5.64	34.72

Protein Annotations

Gene3D:1.10.8.1070	MapMan:1.2.1.3.2	EntrezGene:100818034	Gene3D:3.40.50.300	EMBL:ACUP02007116	InterPro:ATPase_AAA_core
UniProt:D4N5G3	EnsemblPlantsGene:GLYMA_11G221000	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0009536
GO:GO:0009570	GO:GO:0009579	GO:GO:0030234	GO:GO:0043085	GO:GO:0046863	EMBL:GQ917183
EnsemblPlants:KRH31002	ProteinID:KRH31002	ProteinID:KRH31002.1	ProteinID:KRH31003.1	InterPro:P-loop_NTPase	PFAM:PF00004
PANTHER:PTHR32429	PANTHER:PTHR32429:SF12	SUPFAM:SSF52540	UniParc:UPI0001CD8CB0	SEG:seg	:

Description

hypothetical protein

Coordinates

chr11:-:31621224..31624882

Molecular Weight (calculated)

48668.2 Da

IEP (calculated)

6.574

GRAVY (calculated)

-0.301

Length

443 amino acids

Sequence
(BLAST)

001: MAASVSTVGA VNRALLNLNG SGPGVSAPSS SFFGSSLKKV IGSRVPNTKI SSGSFKIVAV EEKKEIEETQ QTDKDRWKGL AYDISDDQQD ITRGKGLVDS
101: LFQAPQDAGT HYAVMSSYEY LSTGLRQYLD NNMDGFYIAP AFMDKLVVHI TKNFMTLPNI KVPLILGIWG GKGQGKSFQC ELVFAKMGIN PIMMSAGELE
201: SGNAGEPAKL IRQRYREAAD LIKKGKMCAL FINDLDAGAG RLGGTTQYTV NNQMVNATLM NIADNPTNVQ LPGMYNKEEN PRVPIIVTGN DFSTLYAPLI
301: RDGRMEKFYW APTRDDRIGV CTGIFRTDSI PEQDVVKIVD TFPGQSIDFF GALRARVYDD EVRKWISGVG VDGIGKKLVN SKDGPPTFEQ PKMTLEKLLT
401: YGNMLVQEQE NVKRVQLADK YLNEAALGNA NEDAINRGTF FQS

Best Arabidopsis Sequence Match ( AT2G39730.2 )
(BLAST)

001: MAAAVSTVGA INRAPLSLNG SGSGAVSAPA STFLGKKVVT VSRFAQSNKK SNGSFKVLAV KEDKQTDGDR WRGLAYDTSD DQQDITRGKG MVDSVFQAPM
101: GTGTHHAVLS SYEYVSQGLR QYNLDNMMDG FYIAPAFMDK LVVHITKNFL TLPNIKVPLI LGIWGGKGQG KSFQCELVMA KMGINPIMMS AGELESGNAG
201: EPAKLIRQRY REAADLIKKG KMCCLFINDL DAGAGRMGGT TQYTVNNQMV NATLMNIADN PTNVQLPGMY NKEENARVPI ICTGNDFSTL YAPLIRDGRM
301: EKFYWAPTRE DRIGVCKGIF RTDKIKDEDI VTLVDQFPGQ SIDFFGALRA RVYDDEVRKF VESLGVEKIG KRLVNSREGP PVFEQPEMTY EKLMEYGNML
401: VMEQENVKRV QLAETYLSQA ALGDANADAI GRGTFYGKTE EKEPSK

Arabidopsis Description

RCARibulose bisphosphate carboxylase/oxygenase activase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P10896]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.