CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plastid: 20443193
nucleus: 21132161
extracellular: 22945350

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 22945350 doi

C Liao, F Hochholdinger, C Li

Key Laboratory of Plant-Soil Interactions, Ministry of Education, Center for Resources, Environment and Food Security, China Agricultural University, Beijing, China.

msms PMID: 20443193 doi

N Ahsan, Y Nanjo, H Sawada, Y Kohno, S Komatsu

National Institute of Crop Science, Tsukuba, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH31002	Soybean	nucleus, plastid	94.81	94.81
KRH73060	Soybean	nucleus, plastid	90.74	84.1
KRH15079	Soybean	nucleus, plastid	89.16	82.64
GSMUA_Achr11P...	Banana	plasma membrane, plastid	81.26	82.19
GSMUA_Achr10P...	Banana	plastid	75.39	82.06
VIT_06s0004g05180.t01	Wine grape	plastid	86.0	80.72
Bra017055.1-P	Field mustard	plastid	79.91	79.91
Solyc09g011080.2.1	Tomato	plastid	78.78	79.5
Zm00001d048593_P001	Maize	plastid	76.75	78.52
Os11t0707000-02	Rice	plastid	76.75	78.52
Solyc10g086580.1.1	Tomato	plastid	78.33	77.98
KRH65878	Soybean	plastid	82.39	77.0
TraesCS4D01G134900.1	Wheat	plastid	74.49	76.39
TraesCS4A01G177600.1	Wheat	plastid	74.49	76.39
TraesCS4B01G140200.1	Wheat	plastid	74.04	75.93
EES10316	Sorghum	plastid	75.17	75.68
GSMUA_Achr2P16450_001	Banana	plastid	81.04	75.58
Bra005019.1-P	Field mustard	plastid	80.14	74.74
Bra000144.1-P	Field mustard	plastid	79.68	74.32
AT2G39730.1	Thale cress	plastid	79.46	74.26
TraesCS4D01G135000.9	Wheat	plastid	74.49	71.12
TraesCS4A01G177500.1	Wheat	plastid	74.27	70.91
HORVU4Hr1G027260.12	Barley	cytosol	74.27	70.6
TraesCS4B01G140300.1	Wheat	plastid	73.81	70.47
Zm00001d048592_P001	Maize	plastid	71.33	68.25
KRH75848	Soybean	endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole	17.83	66.95
EES10317	Sorghum	plastid	70.65	66.17
KRH55240	Soybean	cytosol	11.51	62.2
CDY58991	Canola	cytosol	8.58	46.34
KRH23699	Soybean	plastid	40.63	42.06
Os11t0707100-00	Rice	golgi, mitochondrion, plastid	17.16	38.0
PGSC0003DMT400091016	Potato	plastid	14.45	34.78
Os11t0707050-00	Rice	cytosol, nucleus, plastid	5.64	34.72

Protein Annotations

Gene3D:1.10.8.1070	MapMan:1.2.1.3.2	EntrezGene:100797222	Gene3D:3.40.50.300	EMBL:ACUP02010821	ProteinID:ADD60248.1
InterPro:ATPase_AAA_core	EMBL:BT093653	UniProt:C6T859	EnsemblPlantsGene:GLYMA_18G036400	GO:GO:0000166	GO:GO:0003674
GO:GO:0005488	GO:GO:0005524	EMBL:GQ917184	ProteinID:KRG97873.1	EnsemblPlants:KRG97874	ProteinID:KRG97874
ProteinID:KRG97874.1	InterPro:P-loop_NTPase	PFAM:PF00004	PANTHER:PTHR32429	PANTHER:PTHR32429:SF12	SUPFAM:SSF52540
UniParc:UPI0001B15EF6	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr18:+:2855303..2859675

Molecular Weight (calculated)

48626.3 Da

IEP (calculated)

7.336

GRAVY (calculated)

-0.284

Length

443 amino acids

Sequence
(BLAST)

001: MAASVSTVGA VNRALLNLNG SGAGASAPSS AFFGTSLKKV IASRVPNSKV SGGSFKIVAV EEKKEIEETQ QTDKDRWKGL AYDISDDQQD ITRGKGLVDS
101: LFQAPQDAGT HYAVMSSYEY LSTGLRQYLD NKMDGFYIAP AFMDKLVVHI SKNFMTLPNI KVPLILGIWG GKGQGKSFQC ELVFAKMGIN PIMMSAGELE
201: SGNAGEPAKL IRQRYREAAD MIKKGKMCAL FINDLDAGAG RLGGTTQYTV NNQMVNATLM NIADNPTNVQ LPGMYNKEEN PRVPIIVTGN DFSTLYAPLI
301: RDGRMEKFYW APTREDRIGV CTGIFRTDGI PEQDIVKLVD TFPGQSIDFF GALRARVYDD EVRKWISGVG VDSVGKKLVN SKDGPPTFEQ PKMTLEKLLL
401: YGNMLVQEQE NVKRVQLADK YLNEAALGNA NEDAIQRGTF FQS

Best Arabidopsis Sequence Match ( AT2G39730.2 )
(BLAST)

001: MAAAVSTVGA INRAPLSLNG SGSGAVSAPA STFLGKKVVT VSRFAQSNKK SNGSFKVLAV KEDKQTDGDR WRGLAYDTSD DQQDITRGKG MVDSVFQAPM
101: GTGTHHAVLS SYEYVSQGLR QYNLDNMMDG FYIAPAFMDK LVVHITKNFL TLPNIKVPLI LGIWGGKGQG KSFQCELVMA KMGINPIMMS AGELESGNAG
201: EPAKLIRQRY REAADLIKKG KMCCLFINDL DAGAGRMGGT TQYTVNNQMV NATLMNIADN PTNVQLPGMY NKEENARVPI ICTGNDFSTL YAPLIRDGRM
301: EKFYWAPTRE DRIGVCKGIF RTDKIKDEDI VTLVDQFPGQ SIDFFGALRA RVYDDEVRKF VESLGVEKIG KRLVNSREGP PVFEQPEMTY EKLMEYGNML
401: VMEQENVKRV QLAETYLSQA ALGDANADAI GRGTFYGKTE EKEPSK

Arabidopsis Description

RCARibulose bisphosphate carboxylase/oxygenase activase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P10896]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.