Factsheet for PGSC0003DMT400091016

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 4
cytosol 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plastid
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH55240	Soybean	cytosol	13.04	29.27
KRH75848	Soybean	endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole	17.93	27.97
CDY58991	Canola	cytosol	9.24	20.73
KRH31002	Soybean	nucleus, plastid	35.87	14.9
Zm00001d048593_P001	Maize	plastid	34.24	14.55
KRG97874	Soybean	plastid	34.78	14.45
PGSC0003DMT400049256	Potato	cytosol, plastid	34.24	14.42
EES10316	Sorghum	plastid	34.24	14.32
GSMUA_Achr11P...	Banana	plasma membrane, plastid	33.7	14.16
Os11t0707100-00	Rice	golgi, mitochondrion, plastid	15.22	14.0
VIT_06s0004g05180.t01	Wine grape	plastid	35.87	13.98
TraesCS4D01G134900.1	Wheat	plastid	32.61	13.89
TraesCS4B01G140200.1	Wheat	plastid	32.61	13.89
TraesCS4A01G177600.1	Wheat	plastid	32.61	13.89
Os11t0707000-02	Rice	plastid	32.07	13.63
KRH15079	Soybean	nucleus, plastid	35.33	13.6
PGSC0003DMT400028767	Potato	plastid	32.07	13.47
KRH73060	Soybean	nucleus, plastid	34.78	13.39
Zm00001d048592_P001	Maize	plastid	33.15	13.17
TraesCS4D01G135000.9	Wheat	plastid	33.15	13.15
TraesCS4A01G177500.1	Wheat	plastid	33.15	13.15
TraesCS4B01G140300.1	Wheat	plastid	32.61	12.93
EES10317	Sorghum	plastid	32.61	12.69
HORVU4Hr1G027260.12	Barley	cytosol	32.07	12.66
Bra017055.1-P	Field mustard	plastid	30.43	12.64
GSMUA_Achr2P16450_001	Banana	plastid	32.61	12.63
Bra005019.1-P	Field mustard	plastid	30.98	12.0
AT2G39730.1	Thale cress	plastid	30.43	11.81
GSMUA_Achr10P...	Banana	plastid	26.09	11.79
Bra000144.1-P	Field mustard	plastid	30.43	11.79
PGSC0003DMT400036879	Potato	extracellular	17.93	11.22
Os11t0707050-00	Rice	cytosol, nucleus, plastid	0.54	1.39

Protein Annotations

EnsemblPlants:PGSC0003DMT400091016	EnsemblPlantsGene:PGSC0003DMG400040587	Gene3D:1.10.8.1070	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
ncoils:Coil	PANTHER:PTHR32429	PANTHER:PTHR32429:SF12	PGSC:PGSC0003DMG400040587	TMHMM:TMhelix	UniParc:UPI000294E015
UniProt:M1DLQ3	MapMan:35.1	:	:	:	:

Description

Rubisco activase [Source:PGSC_GENE;Acc:PGSC0003DMG400040587]

Coordinates

chr3:+:23864437..23865567

Molecular Weight (calculated)

21213.6 Da

IEP (calculated)

8.619

GRAVY (calculated)

-0.249

Length

184 amino acids

Sequence
(BLAST)

001: METIMRSYYF QAGYTGMMVD SLNDSSDYLF LDSTFIIFTL NSLSRVNRGE REQGGRIKRN DYDEAGLKGG IFRSDNVPEE AIVKILYCFH GQSIGTNTRE
101: FKMKFLLLIT DVYPFVVVTY FFGALRARIY DDEVRKWVLG TGIKAIEEKL WNSKEGPPTF DQQNLPLRSS SGMVTCLFKN KRML

Best Arabidopsis Sequence Match ( AT2G39730.3 )
(BLAST)

001: MAAAVSTVGA INRAPLSLNG SGSGAVSAPA STFLGKKVVT VSRFAQSNKK SNGSFKVLAV KEDKQTDGDR WRGLAYDTSD DQQDITRGKG MVDSVFQAPM
101: GTGTHHAVLS SYEYVSQGLR QYNLDNMMDG FYIAPAFMDK LVVHITKNFL TLPNIKVPLI LGIWGGKGQG KSFQCELVMA KMGINPIMMS AGELESGNAG
201: EPAKLIRQRY REAADLIKKG KMCCLFINDL DAGAGRMGGT TQYTVNNQMV NATLMNIADN PTNVQLPGMY NKEENARVPI ICTGNDFSTL YAPLIRDGRM
301: EKFYWAPTRE DRIGVCKGIF RTDKIKDEDI VTLVDQFPGQ SIDFFGALRA RVYDDEVRKF VESLGVEKIG KRLVNSREGP PVFEQPEMTY EKLMEYGNML
401: VMEQENVKRV QLAETYLSQA ALGDANADAI GRGTFYGKTE V

Arabidopsis Description

RCARibulose bisphosphate carboxylase/oxygenase activase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P10896]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.