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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 11
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:plastid
BaCelLo:plastid
ChloroP:plastid
EpiLoc:plastid
iPSORT:plastid
MultiLoc:plastid
Plant-mPloc:plastid
Predotar:plastid
PProwler:plastid
TargetP:plastid
WoLF PSORT:plastid
YLoc:plastid
PPI

Inferred distinct locusB in Crop

locusBlocations
Bra027469.1-P

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT2G39730.1 Bra027469.1-P AT5G42980.1 15352244
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX93240 Canola plastid 97.74 98.63
Bra000144.1-P Field mustard plastid 94.36 88.0
Bra005019.1-P Field mustard plastid 93.68 87.37
AT2G39730.1 Thale cress plastid 93.23 87.13
VIT_13s0019g02050.t01 Wine grape plastid 80.14 81.05
KRG97874 Soybean plastid 79.91 79.91
GSMUA_Achr10P... Banana plastid 73.36 79.85
KRH31002 Soybean nucleus, plastid 79.46 79.46
GSMUA_Achr11P... Banana plasma membrane, plastid 78.1 79.0
Os11t0707000-02 Rice plastid 76.98 78.75
PGSC0003DMT400028767 Potato plastid 77.43 78.31
Zm00001d048593_P001 Maize plastid 76.07 77.83
TraesCS4D01G134900.1 Wheat plastid 75.85 77.78
TraesCS4A01G177600.1 Wheat plastid 75.85 77.78
TraesCS4B01G140200.1 Wheat plastid 75.39 77.31
Solyc09g011080.2.1 Tomato plastid 76.3 76.99
PGSC0003DMT400049256 Potato cytosol, plastid 75.85 76.89
EES10316 Sorghum plastid 76.07 76.59
VIT_06s0004g05180.t01 Wine grape plastid 80.59 75.64
VIT_08s0007g00840.t01 Wine grape plastid 80.59 75.32
Solyc10g086580.1.1 Tomato plastid 75.62 75.28
KRH15079 Soybean nucleus, plastid 80.59 74.69
KRH73060 Soybean nucleus, plastid 80.14 74.27
GSMUA_Achr2P16450_001 Banana plastid 78.78 73.47
KRH65878 Soybean plastid 77.88 72.78
Zm00001d048592_P001 Maize plastid 73.59 70.41
TraesCS4B01G140300.1 Wheat plastid 72.91 69.61
TraesCS4D01G135000.9 Wheat plastid 72.91 69.61
TraesCS4A01G177500.1 Wheat plastid 72.69 69.4
EES10317 Sorghum plastid 73.81 69.13
HORVU4Hr1G027260.12 Barley cytosol 72.46 68.88
KRH75848 Soybean endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole 16.25 61.02
KRH55240 Soybean cytosol 9.93 53.66
Bra016017.1-P Field mustard mitochondrion, plastid 40.18 42.28
Os11t0707100-00 Rice golgi, mitochondrion, plastid 17.16 38.0
Os11t0707050-00 Rice cytosol, nucleus, plastid 6.09 37.5
PGSC0003DMT400091016 Potato plastid 12.64 30.43
Protein Annotations
EnsemblPlants:Bra017055.1EnsemblPlants:Bra017055.1-PEnsemblPlantsGene:Bra017055Gene3D:1.10.8.1070Gene3D:3.40.50.300GO:GO:0000166
GO:GO:0003674GO:GO:0005488GO:GO:0005524InterPro:ATPase_AAA_coreInterPro:P-loop_NTPasePANTHER:PTHR32429
PANTHER:PTHR32429:SF12PFAM:PF00004SEG:segSUPFAM:SSF52540UniParc:UPI0002544D63UniProt:M4DKM4
MapMan:1.2.1.3.2:::::
Description
AT2G39730 (E=2e-239) RCA | RCA (RUBISCO ACTIVASE); ADP binding / ATP binding / enzyme regulator/ ribulose-1,5-bisphosphate carboxylase/oxygenase activator
Coordinates
chrA04:-:16881920..16884480
Molecular Weight (calculated)
48545.5 Da
IEP (calculated)
7.897
GRAVY (calculated)
-0.280
Length
443 amino acids
Sequence
(BLAST)
001: MAAAVSTVGA INRAPLSLNG SGAGAASVPA TTFLGKKVVT ASRFAQNNKK SNGSFKVVAV KEDKQTDGDR WRGLAYDMSD DQQDITRGKG MVDSVFQAPM
101: GTGTHNAVLS SYEYISQGLK QYNLDKMMDG LYIAPAFMDK LVVHITKNFL TLPNIKVPLI LGVWGGKGQG KSFQCELVMA KMGINPIMMS AGELESGNAG
201: EPAKLIRQRY REAADLIKKG KMCCLFINDL DAGAGRMGGT TQYTVNNQMV NATLMNIADN PTNVQLPGMY NKEDNARVPI IVTGNDFSTL YAPLIRDGRM
301: EKFYWAPTRE DRIGVCKGIF RTDKIKDEDI VTLVDQFPGQ SIDFFGALRA RVYDDEVRKF VEGLGVEKIS KRLVNSREGP PLFEQPEMTL EKLMEYGNML
401: VMEQENVKRV QLADQYLNEA ALGDANADAI GRGTFFGQTT GQA
Best Arabidopsis Sequence Match ( AT2G39730.2 )
(BLAST)
001: MAAAVSTVGA INRAPLSLNG SGSGAVSAPA STFLGKKVVT VSRFAQSNKK SNGSFKVLAV KEDKQTDGDR WRGLAYDTSD DQQDITRGKG MVDSVFQAPM
101: GTGTHHAVLS SYEYVSQGLR QYNLDNMMDG FYIAPAFMDK LVVHITKNFL TLPNIKVPLI LGIWGGKGQG KSFQCELVMA KMGINPIMMS AGELESGNAG
201: EPAKLIRQRY REAADLIKKG KMCCLFINDL DAGAGRMGGT TQYTVNNQMV NATLMNIADN PTNVQLPGMY NKEENARVPI ICTGNDFSTL YAPLIRDGRM
301: EKFYWAPTRE DRIGVCKGIF RTDKIKDEDI VTLVDQFPGQ SIDFFGALRA RVYDDEVRKF VESLGVEKIG KRLVNSREGP PVFEQPEMTY EKLMEYGNML
401: VMEQENVKRV QLAETYLSQA ALGDANADAI GRGTFYGKTE EKEPSK
Arabidopsis Description
RCARibulose bisphosphate carboxylase/oxygenase activase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P10896]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.