Factsheet for PGSC0003DMT400028767

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400049256	Potato	cytosol, plastid	84.47	84.67
GSMUA_Achr10P...	Banana	plastid	75.11	80.84
GSMUA_Achr11P...	Banana	plasma membrane, plastid	78.54	78.54
Bra017055.1-P	Field mustard	plastid	78.31	77.43
TraesCS4D01G134900.1	Wheat	plastid	76.03	77.08
TraesCS4A01G177600.1	Wheat	plastid	76.03	77.08
Os11t0707000-02	Rice	plastid	75.57	76.44
TraesCS4B01G140200.1	Wheat	plastid	75.34	76.39
Zm00001d048593_P001	Maize	plastid	74.43	75.29
EES10316	Sorghum	plastid	74.66	74.32
GSMUA_Achr2P16450_001	Banana	plastid	79.22	73.05
Bra005019.1-P	Field mustard	plastid	79.0	72.84
Bra000144.1-P	Field mustard	plastid	78.31	72.21
AT2G39730.1	Thale cress	plastid	78.08	72.15
HORVU4Hr1G027260.12	Barley	cytosol	73.74	69.31
TraesCS4A01G177500.1	Wheat	plastid	73.06	68.97
TraesCS4D01G135000.9	Wheat	plastid	73.06	68.97
TraesCS4B01G140300.1	Wheat	plastid	72.6	68.53
Zm00001d048592_P001	Maize	plastid	71.92	68.03
EES10317	Sorghum	plastid	72.6	67.23
PGSC0003DMT400036879	Potato	extracellular	34.47	51.36
Os11t0707100-00	Rice	golgi, mitochondrion, plastid	17.35	38.0
Os11t0707050-00	Rice	cytosol, nucleus, plastid	5.94	36.11
PGSC0003DMT400091016	Potato	plastid	13.47	32.07

Protein Annotations

EnsemblPlants:PGSC0003DMT400028767	EnsemblPlantsGene:PGSC0003DMG400011072	EntrezGene:102590242	Gene3D:1.10.8.1070	Gene3D:3.40.50.300	GO:GO:0000166
GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	InterPro:ATPase_AAA_core	InterPro:P-loop_NTPase	PANTHER:PTHR32429
PANTHER:PTHR32429:SF8	PFAM:PF00004	PGSC:PGSC0003DMG400011072	RefSeq:XP_006339014.1	SUPFAM:SSF52540	UniParc:UPI000296DE1F
UniProt:M1ARN7	MapMan:1.2.1.3.2	:	:	:	:

Description

Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic [Source:PGSC_GENE;Acc:PGSC0003DMG400011072]

Coordinates

chr10:+:54287409..54290230

Molecular Weight (calculated)

48533.4 Da

IEP (calculated)

8.670

GRAVY (calculated)

-0.320

Length

438 amino acids

Sequence
(BLAST)

001: MASSVSTVAA ANKVLLSLNN SVAGNSAPST VFFGKTLKKV NAKGTSSPKV SKRSFRIVGA QEIDEKKQTD QDRWKGLVTD MSDDQQDITR GKGMVDPLFQ
101: APVGTGTHHP VLSSYEYISQ GLRQYNLDNT LDGFYIAPAF MDKLVVHITK NFLTLPNIKV PLILGIWGGK GQGKSFQCEL VFRKMGINPI MMSAGELESG
201: NAGEPAKLIR QRYREAAEII RKGNMCVLFI NDLDAGAGRM GGTTQYTVNN QMVNATLMNI ADNPTNVQLP GMYNKQENAR VPIIVTGNDF STLYAPLIRD
301: GRMEKFYWAP TREDRIGVCK GIFRTDSVPD EHVVRLVDAF PGQSIDFFGA LRARVYDDEV RKWIEKTGIE QVGEKLLNSI EGPPKFEQPK MTIDKLLEYG
401: YLLVQEQENV KRVQLADKYL KEAALGDANA DAINMGNF

Best Arabidopsis Sequence Match ( AT2G39730.2 )
(BLAST)

001: MAAAVSTVGA INRAPLSLNG SGSGAVSAPA STFLGKKVVT VSRFAQSNKK SNGSFKVLAV KEDKQTDGDR WRGLAYDTSD DQQDITRGKG MVDSVFQAPM
101: GTGTHHAVLS SYEYVSQGLR QYNLDNMMDG FYIAPAFMDK LVVHITKNFL TLPNIKVPLI LGIWGGKGQG KSFQCELVMA KMGINPIMMS AGELESGNAG
201: EPAKLIRQRY REAADLIKKG KMCCLFINDL DAGAGRMGGT TQYTVNNQMV NATLMNIADN PTNVQLPGMY NKEENARVPI ICTGNDFSTL YAPLIRDGRM
301: EKFYWAPTRE DRIGVCKGIF RTDKIKDEDI VTLVDQFPGQ SIDFFGALRA RVYDDEVRKF VESLGVEKIG KRLVNSREGP PVFEQPEMTY EKLMEYGNML
401: VMEQENVKRV QLAETYLSQA ALGDANADAI GRGTFYGKTE EKEPSK

Arabidopsis Description

RCARibulose bisphosphate carboxylase/oxygenase activase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P10896]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.