Factsheet for HORVU4Hr1G027260.12

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
iPSORT:	plastid
MultiLoc:	cytosol
TargetP:	mitochondrion
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU1Hr1G075560.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G39730.1	HORVU1Hr1G075560.1	AT5G42980.1	15352244

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G140300.1	Wheat	plastid	87.55	87.93
TraesCS4A01G177500.1	Wheat	plastid	87.55	87.93
TraesCS4D01G135000.9	Wheat	plastid	87.34	87.72
Os11t0707000-02	Rice	plastid	79.18	85.22
Zm00001d048593_P001	Maize	plastid	73.61	79.21
EES10316	Sorghum	plastid	73.18	77.5
GSMUA_Achr10P...	Banana	plastid	65.67	75.18
GSMUA_Achr11P...	Banana	plasma membrane, plastid	70.6	75.11
KRH31002	Soybean	nucleus, plastid	71.24	74.94
KRG97874	Soybean	plastid	70.6	74.27
VIT_13s0019g02050.t01	Wine grape	plastid	69.74	74.2
CDX93240	Canola	plastid	69.53	73.8
PGSC0003DMT400028767	Potato	plastid	69.31	73.74
PGSC0003DMT400049256	Potato	cytosol, plastid	69.1	73.68
Solyc09g011080.2.1	Tomato	plastid	69.31	73.58
Solyc10g086580.1.1	Tomato	plastid	69.31	72.58
Bra017055.1-P	Field mustard	plastid	68.88	72.46
VIT_08s0007g00840.t01	Wine grape	plastid	71.89	70.68
VIT_06s0004g05180.t01	Wine grape	plastid	70.82	69.92
KRH73060	Soybean	nucleus, plastid	71.46	69.67
CDY20474	Canola	plastid	69.74	69.44
AT2G39730.1	Thale cress	plastid	70.6	69.41
GSMUA_Achr2P16450_001	Banana	plastid	70.6	69.26
KRH15079	Soybean	nucleus, plastid	71.03	69.25
CDX74838	Canola	plastid	69.53	69.23
CDY24950	Canola	plastid	70.39	69.05
CDY07640	Canola	plastid	70.17	68.84
Bra005019.1-P	Field mustard	plastid	69.74	68.42
Zm00001d048592_P001	Maize	plastid	67.6	68.03
Bra000144.1-P	Field mustard	plastid	69.1	67.79
KRH65878	Soybean	plastid	68.88	67.72
EES10317	Sorghum	plastid	66.95	65.96
KRH75848	Soybean	endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole	14.16	55.93
CDY68720	Canola	cytosol	14.38	55.83
KRH55240	Soybean	cytosol	9.66	54.88
CDY21872	Canola	cytosol	14.59	53.12
HORVU0Hr1G005570.3	Barley	cytosol	24.25	49.78
PGSC0003DMT400091016	Potato	plastid	12.66	32.07

Protein Annotations

EnsemblPlants:HORVU4Hr1G027260.12	EnsemblPlantsGene:HORVU4Hr1G027260	Gene3D:1.10.8.1070	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674
GO:GO:0005488	GO:GO:0005524	InterPro:ATPase_AAA_core	InterPro:P-loop_NTPase	PANTHER:PTHR32429	PANTHER:PTHR32429:SF8
PFAM:PF00004	SEG:seg	SUPFAM:SSF52540	UniParc:UPI000B47B384	UniProt:A0A287NMQ3	MapMan:1.2.1.3.2

Description

No Description!

Coordinates

chrchr4H:-:166878126..166880711

Molecular Weight (calculated)

51538.5 Da

IEP (calculated)

6.686

GRAVY (calculated)

-0.397

Length

466 amino acids

Sequence
(BLAST)

001: HGIDGQQTYL QLQLQRLVLT VQVIQPAGQD AQNPISSVWP LGDREADPQA GASTPTNFLG KKLKKQVTSA VNYHGKSSKA NRFTVMAAEN IDEKRNTDKW
101: KGLAYDISDD QQDITRGKGI VDSLFQAPTG DGTHEAVLSS YEYVSQGLRK YDFDNTMGGF YIAPAFMDKL VVHLSKNFMT LPNIKIPLIL GIWGGKGQGK
201: SFQCELVFAK MGINPIMMSA GELESGNAGE PAKLIRQRYR EAADMIKKGK MCCLFINDLD AGAGRMGGTT QYTVNNQMVN ATLMNIADAP TNVQLPGMYN
301: KEENPRVPIV VTGNDFSTLY APLIRDGRME KFYWAPTRDD RIGVCKGIFQ TDNVSDESVV KIVDTFPGQS IDFFGALRAR VYDDEVRKWV GSTGIENIGK
401: RLVNSRDGPV TFEQPKMTVE KLLEYGHMLV QEQDNVKRVQ LADTYMSQAA LGDANQDAMK TGSFYG

Best Arabidopsis Sequence Match ( AT1G73110.1 )
(BLAST)

001: MALANISLRF KFPPLQSSSS SSSSFNATLI NTRKLSSIVC SKPSSNDGGK VANDDGGAKP RKKLSEQSSW EVKDSEGKDY LYRLGAESDN VNIAVGARSG
101: MIDDVFIGDF LGKDSDIVFD YRQKATRSFE HLQGDYYIAP SFLDKVAVHI VKNYLAPSLN IKIPLILGIW GGKGQGKTFQ TELIFKTMGV EPVIMSAGEL
201: ESDRAGEPGR LIRDRYRTAS QVIQNQGKMS VLMINDIDAG LGRFGETQMT VNNQIVVGTL MNLADNPTRV SVGQEWREAD MVNRVPLIVT GNDFSTLYAP
301: LIREGRMEKF YWQPTREDIV NIVSRMYEKD GISRKDVISI VDKFPNQALD FYGALRSRTY DRSILKWVDE AGGMETLGKV LLRRKKTQEV PQFTAPEQTV
401: EALLESGYSL INEQKLIMET KLSKEYMKNM DD

Arabidopsis Description

At1g73110/F3N23_39 [Source:UniProtKB/TrEMBL;Acc:Q9AST9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.