Factsheet for Zm00001d048592_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid, secretory
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	secretory
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 22065420
plastid: 23198870

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d038652_P003

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G39730.1	Zm00001d038652_P003	AT5G42980.1	15352244

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES10317	Sorghum	plastid	82.51	80.76
CDY20474	Canola	plastid	78.62	77.78
CDX74838	Canola	plastid	78.4	77.56
TraesCS4D01G134900.1	Wheat	plastid	72.35	77.55
TraesCS4A01G177600.1	Wheat	plastid	72.35	77.55
TraesCS4B01G140200.1	Wheat	plastid	71.92	77.08
Os11t0707000-02	Rice	plastid	71.92	76.91
Zm00001d048593_P001	Maize	plastid	71.49	76.44
CDY07640	Canola	plastid	78.19	76.21
Bra005019.1-P	Field mustard	plastid	77.97	76.0
CDY24950	Canola	plastid	77.97	76.0
AT2G39730.1	Thale cress	plastid	77.32	75.53
Bra000144.1-P	Field mustard	plastid	77.11	75.16
VIT_08s0007g00840.t01	Wine grape	plastid	76.89	75.11
GSMUA_Achr10P...	Banana	plastid	65.66	74.69
GSMUA_Achr2P16450_001	Banana	plastid	76.46	74.53
CDX93240	Canola	plastid	70.41	74.26
VIT_06s0004g05180.t01	Wine grape	plastid	75.38	73.94
KRH65878	Soybean	plastid	75.59	73.84
TraesCS4B01G140300.1	Wheat	plastid	73.87	73.71
Bra017055.1-P	Field mustard	plastid	70.41	73.59
TraesCS4A01G177500.1	Wheat	plastid	73.65	73.49
TraesCS4D01G135000.9	Wheat	plastid	73.65	73.49
VIT_13s0019g02050.t01	Wine grape	plastid	68.9	72.83
GSMUA_Achr11P...	Banana	plasma membrane, plastid	68.68	72.6
KRH73060	Soybean	nucleus, plastid	74.95	72.59
PGSC0003DMT400028767	Potato	plastid	68.03	71.92
KRH15079	Soybean	nucleus, plastid	74.08	71.76
KRG97874	Soybean	plastid	68.25	71.33
KRH31002	Soybean	nucleus, plastid	68.03	71.11
Solyc09g011080.2.1	Tomato	plastid	66.09	69.7
PGSC0003DMT400049256	Potato	cytosol, plastid	65.23	69.11
Solyc10g086580.1.1	Tomato	plastid	65.66	68.31
HORVU4Hr1G027260.12	Barley	cytosol	68.03	67.6
CDY68720	Canola	cytosol	15.55	60.0
CDY21872	Canola	cytosol	16.2	58.59
KRH75848	Soybean	endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole	14.69	57.63
KRH55240	Soybean	cytosol	9.07	51.22
Zm00001d001995_P003	Maize	plastid	41.25	41.52
PGSC0003DMT400091016	Potato	plastid	13.17	33.15

Protein Annotations

EMBL:BT063695	EMBL:KU934211	EnsemblPlants:Zm00001d048592_P001	EnsemblPlants:Zm00001d048592_T001	EnsemblPlantsGene:Zm00001d048592	EntrezGene:100382265
Gene3D:1.10.8.1070	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524
InterPro:ATPase_AAA_core	InterPro:P-loop_NTPase	PANTHER:PTHR32429	PANTHER:PTHR32429:SF8	PFAM:PF00004	ProteinID:AQK48230.1
SEG:seg	SUPFAM:SSF52540	UniParc:UPI0001948E44	UniProt:C0P5X6	MapMan:1.2.1.3.2	:

Description

RUBISCO activase3 RUBISCO activase1

Coordinates

chr4:+:919276..920997

Molecular Weight (calculated)

50985.0 Da

IEP (calculated)

6.103

GRAVY (calculated)

-0.330

Length

463 amino acids

Sequence
(BLAST)

001: MAAAAAFSST SVVAALAASG FLGKKLVTSI IIRNKKKGYD SLHGATTTIR VRAMAVNKET EQDRWRGLAL DTSDDQQDIT RGKGRVDPLF QAPMGDGTHV
101: AVLSSYDYIS QGLRHYSLDN MMDGYYIAPA FMDKLVVHIA KNFMPLPNIK VPLILGIWGG KGQGKSFQCE LVLAKMGINP IVMSAGELES GNAGEPAKLI
201: RQRYREAADM IKKGKMCVLF INDLDAGAGR MGGTTQYTVN NQMVNATLMN IADNPTNVQL PGMYNKEENP RVPIIVTGND FSTLYAPLIR DGRMDKFYWA
301: PTREDRVGVC KGIFRSDGVP DEDVVRLVDA FPGQSIDFFG ALRARVYDDE VRRWVAETGV ENIARRLVNS KEGPPTFEQP RMTLDKLMEY GRMLVEEQEN
401: VKRVQLADKY LSEAALGDAN DDDDLYGKAA QHVRVPVPEG CTDPKAGNFD PTARSDDGSC VYN

Best Arabidopsis Sequence Match ( AT2G39730.1 )
(BLAST)

001: MAAAVSTVGA INRAPLSLNG SGSGAVSAPA STFLGKKVVT VSRFAQSNKK SNGSFKVLAV KEDKQTDGDR WRGLAYDTSD DQQDITRGKG MVDSVFQAPM
101: GTGTHHAVLS SYEYVSQGLR QYNLDNMMDG FYIAPAFMDK LVVHITKNFL TLPNIKVPLI LGIWGGKGQG KSFQCELVMA KMGINPIMMS AGELESGNAG
201: EPAKLIRQRY REAADLIKKG KMCCLFINDL DAGAGRMGGT TQYTVNNQMV NATLMNIADN PTNVQLPGMY NKEENARVPI ICTGNDFSTL YAPLIRDGRM
301: EKFYWAPTRE DRIGVCKGIF RTDKIKDEDI VTLVDQFPGQ SIDFFGALRA RVYDDEVRKF VESLGVEKIG KRLVNSREGP PVFEQPEMTY EKLMEYGNML
401: VMEQENVKRV QLAETYLSQA ALGDANADAI GRGTFYGKGA QQVNLPVPEG CTDPVAENFD PTARSDDGTC VYNF

Arabidopsis Description

RCARibulose bisphosphate carboxylase/oxygenase activase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P10896]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.