CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY21872	Canola	cytosol	93.33	87.5
CDY58991	Canola	cytosol	39.17	57.32
Os11t0707050-00	Rice	cytosol, nucleus, plastid	13.33	22.22
CDX93240	Canola	plastid	74.17	20.27
CDX74838	Canola	plastid	72.5	18.59
CDY20474	Canola	plastid	72.5	18.59
CDY07640	Canola	plastid	72.5	18.32
CDY24950	Canola	plastid	72.5	18.32
TraesCS4D01G134900.1	Wheat	plastid	64.17	17.82
TraesCS4B01G140200.1	Wheat	plastid	64.17	17.82
TraesCS4A01G177600.1	Wheat	plastid	64.17	17.82
Os11t0707000-02	Rice	plastid	63.33	17.55
GSMUA_Achr11P...	Banana	plasma membrane, plastid	60.83	16.67
EES10316	Sorghum	plastid	60.0	16.36
Zm00001d048593_P001	Maize	plastid	58.33	16.17
GSMUA_Achr2P16450_001	Banana	plastid	61.67	15.58
Zm00001d048592_P001	Maize	plastid	60.0	15.55
EES10317	Sorghum	plastid	59.17	15.01
TraesCS4B01G140300.1	Wheat	plastid	56.67	14.66
TraesCS4A01G177500.1	Wheat	plastid	55.83	14.44
TraesCS4D01G135000.9	Wheat	plastid	55.83	14.44
HORVU4Hr1G027260.12	Barley	cytosol	55.83	14.38
GSMUA_Achr10P...	Banana	plastid	43.33	12.78
CDX96450	Canola	plastid	29.17	8.29
CDY59936	Canola	plastid	29.17	8.22
Os11t0707100-00	Rice	golgi, mitochondrion, plastid	10.0	6.0

Protein Annotations

EnsemblPlants:CDY68720	EnsemblPlantsGene:GSBRNA2T00077108001	Gene3D:1.10.8.1070	PANTHER:PTHR32429	PANTHER:PTHR32429:SF8	ProteinID:CDY68720
ProteinID:CDY68720.1	UniParc:UPI0004EF00C8	UniProt:A0A078JQK0	MapMan:35.1	:	:

Description

BnaUnng02970DBnaUnng02970D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JQK0]

Coordinates

chrLK037846:+:4376..4913

Molecular Weight (calculated)

14081.2 Da

IEP (calculated)

8.495

GRAVY (calculated)

-0.571

Length

120 amino acids

Sequence
(BLAST)

001: MEKFYWAPTR EDRIGVCKGI FRTDKIKDED IVTLVDQFLG QSIGVEKISK RLVNSREGPP VFEQREMTLE KLMEYGNMLV MEQENVKRVR QESPASLCNL
101: RCRPRLVDLH RGDGNHIRIF

Best Arabidopsis Sequence Match ( AT2G39730.1 )
(BLAST)

001: MAAAVSTVGA INRAPLSLNG SGSGAVSAPA STFLGKKVVT VSRFAQSNKK SNGSFKVLAV KEDKQTDGDR WRGLAYDTSD DQQDITRGKG MVDSVFQAPM
101: GTGTHHAVLS SYEYVSQGLR QYNLDNMMDG FYIAPAFMDK LVVHITKNFL TLPNIKVPLI LGIWGGKGQG KSFQCELVMA KMGINPIMMS AGELESGNAG
201: EPAKLIRQRY REAADLIKKG KMCCLFINDL DAGAGRMGGT TQYTVNNQMV NATLMNIADN PTNVQLPGMY NKEENARVPI ICTGNDFSTL YAPLIRDGRM
301: EKFYWAPTRE DRIGVCKGIF RTDKIKDEDI VTLVDQFPGQ SIDFFGALRA RVYDDEVRKF VESLGVEKIG KRLVNSREGP PVFEQPEMTY EKLMEYGNML
401: VMEQENVKRV QLAETYLSQA ALGDANADAI GRGTFYGKGA QQVNLPVPEG CTDPVAENFD PTARSDDGTC VYNF

Arabidopsis Description

RCARibulose bisphosphate carboxylase/oxygenase activase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P10896]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.