CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX96450	Canola	plastid	95.77	96.68
AT1G73110.1	Thale cress	plastid	87.79	86.57
VIT_09s0018g01270.t01	Wine grape	extracellular	53.99	79.86
PGSC0003DMT400036879	Potato	extracellular	52.82	76.53
HORVU0Hr1G005570.3	Barley	cytosol	39.44	74.01
GSMUA_Achr10P...	Banana	plastid	68.31	69.29
KRH23699	Soybean	plastid	69.25	68.93
Solyc03g117850.2.1	Tomato	plastid	71.13	68.55
Os04t0658300-01	Rice	plastid	70.19	67.8
OQU82488	Sorghum	plastid	66.43	65.36
TraesCS2D01G501700.1	Wheat	plastid	67.61	64.86
TraesCS2A01G501200.1	Wheat	plastid	67.14	64.56
TraesCS2B01G529300.1	Wheat	plastid	67.14	64.41
Zm00001d001995_P003	Maize	plastid	67.14	62.17
CDX93240	Canola	plastid	42.02	40.77
CDY20474	Canola	plastid	41.78	38.03
CDX74838	Canola	plastid	41.55	37.82
CDY24950	Canola	plastid	41.31	37.05
CDY07640	Canola	plastid	41.31	37.05
CDY68720	Canola	cytosol	8.22	29.17
CDY21872	Canola	cytosol	8.69	28.91
CDY58991	Canola	cytosol	4.69	24.39

Protein Annotations

EnsemblPlants:CDY59936	EnsemblPlantsGene:GSBRNA2T00027908001	Gene3D:1.10.8.1070	Gene3D:3.40.50.300	GO:A0A078J698	GO:GO:0000166
GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	InterPro:ATPase_AAA_core	InterPro:P-loop_NTPase	PANTHER:PTHR32429
PANTHER:PTHR32429:SF11	PFAM:PF00004	ProteinID:CDY59936	ProteinID:CDY59936.1	SEG:seg	SUPFAM:SSF52540
UniParc:UPI0004EDB402	UniProt:A0A078J698	MapMan:35.1	:	:	:

Description

BnaC06g43890DBnaC06g43890D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J698]

Coordinates

chrLK033822:-:37658..40154

Molecular Weight (calculated)

47862.3 Da

IEP (calculated)

6.043

GRAVY (calculated)

-0.371

Length

426 amino acids

Sequence
(BLAST)

001: MALANISLRF KFPPLQYSSS STFNPLLSLR KPSSIACSKA GDDGGKGAVD GGEKPRKLSE QSSWEVKDSE GKDYLYRLGA ESENMNIAVG ARAGMIDDVF
101: IGDFLGKDSD IVFDYRQKAT RSFEHLQGDY YIAPTFMVIT SVHIVKNYLA SSLNIKIPLI LGIWGGKGQG KTFQTELIFK TMGVEPVIMS AGELESDRAG
201: EPGRLIRDRY RTASQVIQNQ GKMSVLMIND IDAGLGRFGE TQMTVNNQIV VGTLMNLADN PTRVSVGQDW READTVNRVP LIVTGNDFSR LYAPLIREGR
301: MEKFYWQPTR EDIVNIVSRM YEKDGISRKD VVSIVDQFPN QALDFYGALR SRTYDRSILK WVDEVGGIET LEKTLLRRKK TQEVPQFIPP EQTVEALLES
401: GYSLIKEQKL INETKLSKEY MKNIDD

Best Arabidopsis Sequence Match ( AT1G73110.1 )
(BLAST)

001: MALANISLRF KFPPLQSSSS SSSSFNATLI NTRKLSSIVC SKPSSNDGGK VANDDGGAKP RKKLSEQSSW EVKDSEGKDY LYRLGAESDN VNIAVGARSG
101: MIDDVFIGDF LGKDSDIVFD YRQKATRSFE HLQGDYYIAP SFLDKVAVHI VKNYLAPSLN IKIPLILGIW GGKGQGKTFQ TELIFKTMGV EPVIMSAGEL
201: ESDRAGEPGR LIRDRYRTAS QVIQNQGKMS VLMINDIDAG LGRFGETQMT VNNQIVVGTL MNLADNPTRV SVGQEWREAD MVNRVPLIVT GNDFSTLYAP
301: LIREGRMEKF YWQPTREDIV NIVSRMYEKD GISRKDVISI VDKFPNQALD FYGALRSRTY DRSILKWVDE AGGMETLGKV LLRRKKTQEV PQFTAPEQTV
401: EALLESGYSL INEQKLIMET KLSKEYMKNM DD

Arabidopsis Description

At1g73110/F3N23_39 [Source:UniProtKB/TrEMBL;Acc:Q9AST9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.