CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_09s0018g01270.t01	Wine grape	extracellular	59.58	88.54
PGSC0003DMT400036879	Potato	extracellular	56.78	82.65
HORVU0Hr1G005570.3	Barley	cytosol	40.89	77.09
GSMUA_Achr10P...	Banana	plastid	71.5	72.86
Solyc03g117850.2.1	Tomato	plastid	74.07	71.72
Bra016017.1-P	Field mustard	mitochondrion, plastid	68.93	70.07
CDX96450	Canola	plastid	68.46	69.43
CDY59936	Canola	plastid	68.93	69.25
AT1G73110.1	Thale cress	plastid	69.16	68.52
Os04t0658300-01	Rice	plastid	69.86	67.8
OQU82488	Sorghum	plastid	67.29	66.51
TraesCS2D01G501700.1	Wheat	plastid	68.46	65.99
TraesCS2A01G501200.1	Wheat	plastid	68.22	65.91
TraesCS2B01G529300.1	Wheat	plastid	67.99	65.54
Zm00001d001995_P003	Maize	plastid	67.52	62.83
KRH31002	Soybean	nucleus, plastid	42.06	40.63
KRG97874	Soybean	plastid	42.06	40.63
KRH65878	Soybean	plastid	41.36	37.34
KRH73060	Soybean	nucleus, plastid	41.59	37.24
KRH15079	Soybean	nucleus, plastid	41.59	37.24
KRH55240	Soybean	cytosol	6.31	32.93
KRH75848	Soybean	endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole	7.71	27.97

Protein Annotations

Gene3D:1.10.8.1070	EntrezGene:100805465	Gene3D:3.40.50.300	MapMan:35.1	EMBL:ACUP02008482	InterPro:ATPase_AAA_core
ncoils:Coil	EnsemblPlantsGene:GLYMA_13G371900	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0009507	GO:GO:0009535
GO:GO:0009536	GO:GO:0009579	GO:GO:0016020	UniProt:I1M608	EnsemblPlants:KRH23699	ProteinID:KRH23699
ProteinID:KRH23699.1	InterPro:P-loop_NTPase	PFAM:PF00004	PANTHER:PTHR32429	PANTHER:PTHR32429:SF11	SUPFAM:SSF52540
UniParc:UPI000233B971	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr13:-:45688941..45695172

Molecular Weight (calculated)

48944.7 Da

IEP (calculated)

8.784

GRAVY (calculated)

-0.533

Length

428 amino acids

Sequence
(BLAST)

001: MTKLLSPSAP PCPCLRVPIP NPTVKYRYAY SHRGQLRVRC SDNSDEEKEK EKKKKKEKRL SQQSSWEAQD AEGRDYLYRL GKEADNMNIA VGQRAGVIDS
101: LFAGNFLGKD SDIVFDYRQK VTRSFQYLQG DYYIAPLFMD KVVCHIVKNY LARVLNTKVP LILGIWGGKG QGKSFQTELI FQAMGIEPVI MSAGELESER
201: AGEPGKLIRE RYRTASQVVQ NQGKMSCLMI NDIDAGLGRF GNTQMTVNNQ IVVGTLMNLS DNPTRVSVGQ DWRESDVTNR IPIIVTGNDF STLYAPLIRD
301: GRMDKFYWQP NQEDILNIVH RMYEKDSISR DEVERVVNTF PNQALDFYGA LRSRTYDRSI LKWIDDIGGV ENFGNKLLKR RKDQSLPVFI PPEQTVDALL
401: ESGYSLIKEQ RLIMETKLSK EYMKNIDD

Best Arabidopsis Sequence Match ( AT1G73110.1 )
(BLAST)

001: MALANISLRF KFPPLQSSSS SSSSFNATLI NTRKLSSIVC SKPSSNDGGK VANDDGGAKP RKKLSEQSSW EVKDSEGKDY LYRLGAESDN VNIAVGARSG
101: MIDDVFIGDF LGKDSDIVFD YRQKATRSFE HLQGDYYIAP SFLDKVAVHI VKNYLAPSLN IKIPLILGIW GGKGQGKTFQ TELIFKTMGV EPVIMSAGEL
201: ESDRAGEPGR LIRDRYRTAS QVIQNQGKMS VLMINDIDAG LGRFGETQMT VNNQIVVGTL MNLADNPTRV SVGQEWREAD MVNRVPLIVT GNDFSTLYAP
301: LIREGRMEKF YWQPTREDIV NIVSRMYEKD GISRKDVISI VDKFPNQALD FYGALRSRTY DRSILKWVDE AGGMETLGKV LLRRKKTQEV PQFTAPEQTV
401: EALLESGYSL INEQKLIMET KLSKEYMKNM DD

Arabidopsis Description

At1g73110/F3N23_39 [Source:UniProtKB/TrEMBL;Acc:Q9AST9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.