CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH15079	Soybean	nucleus, plastid	94.56	94.56
KRG97874	Soybean	plastid	84.1	90.74
KRH31002	Soybean	nucleus, plastid	83.26	89.84
VIT_06s0004g05180.t01	Wine grape	plastid	88.28	89.41
GSMUA_Achr11P...	Banana	plasma membrane, plastid	76.15	83.11
GSMUA_Achr2P16450_001	Banana	plastid	82.43	82.95
KRH65878	Soybean	plastid	82.22	82.91
GSMUA_Achr10P...	Banana	plastid	70.5	82.8
Bra005019.1-P	Field mustard	plastid	80.96	81.47
Solyc09g011080.2.1	Tomato	plastid	74.69	81.32
Bra000144.1-P	Field mustard	plastid	80.75	81.26
AT2G39730.1	Thale cress	plastid	79.5	80.17
Bra017055.1-P	Field mustard	plastid	74.27	80.14
Os11t0707000-02	Rice	plastid	72.18	79.68
KRH75848	Soybean	endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole	19.67	79.66
Solyc10g086580.1.1	Tomato	plastid	73.01	78.43
TraesCS4D01G135000.9	Wheat	plastid	75.94	78.23
TraesCS4A01G177500.1	Wheat	plastid	75.73	78.02
Zm00001d048593_P001	Maize	plastid	70.5	77.83
TraesCS4B01G140300.1	Wheat	plastid	75.31	77.59
TraesCS4A01G177600.1	Wheat	plastid	69.87	77.31
TraesCS4D01G134900.1	Wheat	plastid	69.87	77.31
TraesCS4B01G140200.1	Wheat	plastid	69.46	76.85
EES10316	Sorghum	plastid	69.25	75.23
Zm00001d048592_P001	Maize	plastid	72.59	74.95
EES10317	Sorghum	plastid	72.18	72.94
Os11t0707050-00	Rice	cytosol, nucleus, plastid	10.88	72.22
HORVU4Hr1G027260.12	Barley	cytosol	69.67	71.46
KRH55240	Soybean	cytosol	11.72	68.29
CDY58991	Canola	cytosol	7.95	46.34
KRH23699	Soybean	plastid	37.24	41.59
Os11t0707100-00	Rice	golgi, mitochondrion, plastid	16.11	38.5
PGSC0003DMT400091016	Potato	plastid	13.39	34.78

Protein Annotations

Gene3D:1.10.8.1070	MapMan:1.2.1.3.2	EntrezGene:100806240	Gene3D:3.40.50.300	EMBL:ACUP02001263	ProteinID:ADD60247.1
InterPro:ATPase_AAA_core	UniProt:D4N5G0	EnsemblPlantsGene:GLYMA_02G249600	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150
GO:GO:0009536	GO:GO:0009570	GO:GO:0009579	GO:GO:0030234	GO:GO:0043085	GO:GO:0046863
EMBL:GQ917180	EnsemblPlants:KRH73060	ProteinID:KRH73060	ProteinID:KRH73060.1	InterPro:P-loop_NTPase	PFAM:PF00004
PANTHER:PTHR32429	PANTHER:PTHR32429:SF12	SUPFAM:SSF52540	UniParc:UPI0001CD8CAD	SEG:seg	:

Description

hypothetical protein

Coordinates

chr2:-:43713516..43717718

Molecular Weight (calculated)

52282.4 Da

IEP (calculated)

6.011

GRAVY (calculated)

-0.321

Length

478 amino acids

Sequence
(BLAST)

001: MAASVSTVGA VNGAPLSLNS SGAGASVPSS AFFGTSLKKV IASRVPNVKI SSGSFKIVAA EKEIDEKQQT DKDRWKGLAY DVSDDQQDIT RGKGLVDSLF
101: QAPQDTGTHY AIMSSYEYLS TGLKQYNLDN NMDGFYIAPA FMDKLVVHIS KNFMTLPNIK VPLILGIWGG KGQGKSFQCE LVFAKMGINP IMMSAGELES
201: GNAGEPAKLI RQRYREAADM IKKGKMCALF INDLDAGAGR LGGTTQYTVN NQMVNATLMN IADNPTNVQL PGMYNKEENP RVPIIVTGND FSTLYAPLIR
301: DGRMEKFYWA PTRDDRVGVC NGIFRTDNVP KDDIVKLVDT FPGQSIDFFG ALRARVYDDE VRKWISVVGV DFIGKKLVNS KEGPPTFDQP KMTLSKLLEY
401: GNMLVQEQEN VKRVQLADKY LKEAALGDAN QDSINRGTFY GKAAQQVNIP VPEGCTDPNA SNFDPTARSD DGTCLYTP

Best Arabidopsis Sequence Match ( AT2G39730.1 )
(BLAST)

001: MAAAVSTVGA INRAPLSLNG SGSGAVSAPA STFLGKKVVT VSRFAQSNKK SNGSFKVLAV KEDKQTDGDR WRGLAYDTSD DQQDITRGKG MVDSVFQAPM
101: GTGTHHAVLS SYEYVSQGLR QYNLDNMMDG FYIAPAFMDK LVVHITKNFL TLPNIKVPLI LGIWGGKGQG KSFQCELVMA KMGINPIMMS AGELESGNAG
201: EPAKLIRQRY REAADLIKKG KMCCLFINDL DAGAGRMGGT TQYTVNNQMV NATLMNIADN PTNVQLPGMY NKEENARVPI ICTGNDFSTL YAPLIRDGRM
301: EKFYWAPTRE DRIGVCKGIF RTDKIKDEDI VTLVDQFPGQ SIDFFGALRA RVYDDEVRKF VESLGVEKIG KRLVNSREGP PVFEQPEMTY EKLMEYGNML
401: VMEQENVKRV QLAETYLSQA ALGDANADAI GRGTFYGKGA QQVNLPVPEG CTDPVAENFD PTARSDDGTC VYNF

Arabidopsis Description

RCARibulose bisphosphate carboxylase/oxygenase activase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P10896]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.