Factsheet for Solyc10g086580.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plastid: 20363867
plastid: 22908117
nucleus: 25464976
plastid: 26371478
nucleus: 28394025
extracellular: 29876421

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400049256	Potato	cytosol, plastid	92.81	94.51
Solyc09g011080.2.1	Tomato	plastid	84.94	86.1
KRG97874	Soybean	plastid	77.98	78.33
KRH31002	Soybean	nucleus, plastid	77.3	77.65
VIT_13s0019g02050.t01	Wine grape	plastid	76.18	77.4
GSMUA_Achr11P...	Banana	plasma membrane, plastid	75.96	77.17
GSMUA_Achr10P...	Banana	plastid	70.11	76.66
Os11t0707000-02	Rice	plastid	74.16	76.21
Bra017055.1-P	Field mustard	plastid	75.28	75.62
TraesCS4D01G134900.1	Wheat	plastid	72.36	74.54
TraesCS4A01G177600.1	Wheat	plastid	72.36	74.54
KRH15079	Soybean	nucleus, plastid	79.78	74.27
Zm00001d048593_P001	Maize	plastid	71.91	73.9
TraesCS4B01G140200.1	Wheat	plastid	71.69	73.84
VIT_06s0004g05180.t01	Wine grape	plastid	77.53	73.09
KRH73060	Soybean	nucleus, plastid	78.43	73.01
EES10316	Sorghum	plastid	71.91	72.73
GSMUA_Achr2P16450_001	Banana	plastid	75.73	70.95
Bra000144.1-P	Field mustard	plastid	75.28	70.53
Bra005019.1-P	Field mustard	plastid	75.06	70.32
AT2G39730.1	Thale cress	plastid	74.83	70.25
TraesCS4A01G177500.1	Wheat	plastid	72.81	69.83
TraesCS4D01G135000.9	Wheat	plastid	72.81	69.83
TraesCS4B01G140300.1	Wheat	plastid	72.58	69.61
HORVU4Hr1G027260.12	Barley	cytosol	72.58	69.31
Zm00001d048592_P001	Maize	plastid	68.31	65.66
EES10317	Sorghum	plastid	68.76	64.69
KRH75848	Soybean	endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole	15.73	59.32
KRH55240	Soybean	cytosol	10.34	56.1
Solyc11g027920.1.1	Tomato	cytosol	12.58	48.7
CDY58991	Canola	cytosol	8.76	47.56
Solyc03g117850.2.1	Tomato	plastid	41.35	41.63
Os11t0707100-00	Rice	golgi, mitochondrion, plastid	16.85	37.5
Os11t0707050-00	Rice	cytosol, nucleus, plastid	4.94	30.56

Protein Annotations

Gene3D:1.10.8.1070	MapMan:1.2.1.3.2	Gene3D:3.40.50.300	InterPro:ATPase_AAA_core	GO:GO:0000166	GO:GO:0003674
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0008150	GO:GO:0009536	GO:GO:0009570	GO:GO:0009579	GO:GO:0030234	GO:GO:0043085
GO:GO:0046863	UniProt:K4D489	InterPro:P-loop_NTPase	PFAM:PF00004	PANTHER:PTHR32429	PANTHER:PTHR32429:SF8
SUPFAM:SSF52540	EnsemblPlantsGene:Solyc10g086580.1	EnsemblPlants:Solyc10g086580.1.1	UniParc:UPI000276961C	:	:

Description

No Description!

Coordinates

chr10:-:65363951..65366429

Molecular Weight (calculated)

49240.1 Da

IEP (calculated)

8.748

GRAVY (calculated)

-0.363

Length

445 amino acids

Sequence
(BLAST)

001: MAASVSTIGA ASKAPLSLNN SVAGTSVPST AFFGKSLKKV YAKGVSGPKV SNRNLRIVAQ EVDETKEDRW KGLYDNTSDD QQDIARGKGL VDSLFQAPTG
101: TGTHHAIMNS YEYVSQALKT YQLDNKLDGF YIAPAFMDKL VVHITKNFLT LPNIKVPLIL GVWGGKGQGK SFQCELVFRK MGINPIMMSA GELESGNAGE
201: PAKLIRQRYR EAAEIIRKGN MCCLFINDLD AGAGRMGGTT QYTVNNQMVN ATLMNIADNP TNVQLPGMYN KQENARVPII VTGNDFSTLY APLIRDGRME
301: KFYWAPTRED RIGVCKGIFR TDNVPEEAVV KIVDSFPGQS IDFFGALRAR VYDDEVRKWV SGTGIELIGE KLLNSRDGPP TFEQPKMTLE KLLEYGNMLV
401: QEQENVKRVQ LAETYLKEAA LGDANLKSRL NNEEAKKARH VNFQE

Best Arabidopsis Sequence Match ( AT2G39730.2 )
(BLAST)

001: MAAAVSTVGA INRAPLSLNG SGSGAVSAPA STFLGKKVVT VSRFAQSNKK SNGSFKVLAV KEDKQTDGDR WRGLAYDTSD DQQDITRGKG MVDSVFQAPM
101: GTGTHHAVLS SYEYVSQGLR QYNLDNMMDG FYIAPAFMDK LVVHITKNFL TLPNIKVPLI LGIWGGKGQG KSFQCELVMA KMGINPIMMS AGELESGNAG
201: EPAKLIRQRY REAADLIKKG KMCCLFINDL DAGAGRMGGT TQYTVNNQMV NATLMNIADN PTNVQLPGMY NKEENARVPI ICTGNDFSTL YAPLIRDGRM
301: EKFYWAPTRE DRIGVCKGIF RTDKIKDEDI VTLVDQFPGQ SIDFFGALRA RVYDDEVRKF VESLGVEKIG KRLVNSREGP PVFEQPEMTY EKLMEYGNML
401: VMEQENVKRV QLAETYLSQA ALGDANADAI GRGTFYGKTE EKEPSK

Arabidopsis Description

RCARibulose bisphosphate carboxylase/oxygenase activase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P10896]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.