Factsheet for Solyc03g117850.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

plastid: 22908117
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400036879	Potato	extracellular	64.48	96.94
VIT_09s0018g01270.t01	Wine grape	extracellular	53.17	81.6
HORVU0Hr1G005570.3	Barley	cytosol	38.69	75.33
KRH23699	Soybean	plastid	71.72	74.07
GSMUA_Achr10P...	Banana	plastid	68.33	71.9
Solyc11g027920.1.1	Tomato	cytosol	18.55	71.3
CDY59936	Canola	plastid	68.55	71.13
Bra016017.1-P	Field mustard	mitochondrion, plastid	67.65	71.02
CDX96450	Canola	plastid	67.42	70.62
AT1G73110.1	Thale cress	plastid	68.78	70.37
Os04t0658300-01	Rice	plastid	66.74	66.89
OQU82488	Sorghum	plastid	65.16	66.51
TraesCS2B01G529300.1	Wheat	plastid	66.06	65.77
TraesCS2D01G501700.1	Wheat	plastid	66.06	65.77
TraesCS2A01G501200.1	Wheat	plastid	65.61	65.46
Zm00001d001995_P003	Maize	plastid	64.71	62.17
Solyc10g086580.1.1	Tomato	plastid	41.63	41.35
Solyc09g011080.2.1	Tomato	plastid	40.27	40.55

Protein Annotations

Gene3D:1.10.8.1070	Gene3D:3.40.50.300	MapMan:35.1	InterPro:ATPase_AAA_core	GO:GO:0000166	GO:GO:0003674
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0009507	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0016020	UniProt:K4BLT6
InterPro:P-loop_NTPase	PFAM:PF00004	PANTHER:PTHR32429	PANTHER:PTHR32429:SF11	SUPFAM:SSF52540	EnsemblPlantsGene:Solyc03g117850.2
EnsemblPlants:Solyc03g117850.2.1	UniParc:UPI0002767888	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr3:-:66868704..66877489

Molecular Weight (calculated)

49917.6 Da

IEP (calculated)

5.820

GRAVY (calculated)

-0.400

Length

442 amino acids

Sequence
(BLAST)

001: MALLFNNTNL LRAPLTLHSI PLSSTKQFPN YSSISVRCSS TNQQSDEVRD SDQDEPKKKK RLSEQSSWET KDSDGKDYLY RLGAEADNMN IAVGARAGVI
101: DSLFAGNFLG KDSDIVFDYR QKVTRSFQYL QGDYYIAPVF LDKVVCHIVK NYISNILNAK VPLILGVWGG KGQGKTFQTE LIFQAMGIEP VIMSAGELES
201: ERAGEPGKLI RERYRTASQV VQNQVRSFTA FITGHGKMSV LMINDIDAGL GRFGNTQVTV NNQIVVGTLM NLCDNPTRVS VGQDWREGDI THRIPIIVTG
301: NDFSTMYAPL IRDGRMEKFY WQPTQEDIVN IVCRMYEKDG ITKDEVATIV NTFPNQALDF YGAMRSRTYD QSILKWVEDS GGAEDIGRRF LRQRKKGELP
401: VFIPPEQTLE ALIESGHSLT KEQMLIMESK LSKEYMKNMD EE

Best Arabidopsis Sequence Match ( AT1G73110.1 )
(BLAST)

001: MALANISLRF KFPPLQSSSS SSSSFNATLI NTRKLSSIVC SKPSSNDGGK VANDDGGAKP RKKLSEQSSW EVKDSEGKDY LYRLGAESDN VNIAVGARSG
101: MIDDVFIGDF LGKDSDIVFD YRQKATRSFE HLQGDYYIAP SFLDKVAVHI VKNYLAPSLN IKIPLILGIW GGKGQGKTFQ TELIFKTMGV EPVIMSAGEL
201: ESDRAGEPGR LIRDRYRTAS QVIQNQGKMS VLMINDIDAG LGRFGETQMT VNNQIVVGTL MNLADNPTRV SVGQEWREAD MVNRVPLIVT GNDFSTLYAP
301: LIREGRMEKF YWQPTREDIV NIVSRMYEKD GISRKDVISI VDKFPNQALD FYGALRSRTY DRSILKWVDE AGGMETLGKV LLRRKKTQEV PQFTAPEQTV
401: EALLESGYSL INEQKLIMET KLSKEYMKNM DD

Arabidopsis Description

At1g73110/F3N23_39 [Source:UniProtKB/TrEMBL;Acc:Q9AST9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.