CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU0Hr1G005570.3	Barley	cytosol	43.42	82.82
Zm00001d001995_P003	Maize	plastid	86.61	81.52
Os04t0658300-01	Rice	plastid	80.83	79.37
VIT_09s0018g01270.t01	Wine grape	extracellular	51.27	77.08
TraesCS2D01G501700.1	Wheat	plastid	75.75	73.87
PGSC0003DMT400036879	Potato	extracellular	50.12	73.81
TraesCS2B01G529300.1	Wheat	plastid	75.52	73.65
TraesCS2A01G501200.1	Wheat	plastid	75.29	73.59
GSMUA_Achr10P...	Banana	plastid	71.13	73.33
Bra016017.1-P	Field mustard	mitochondrion, plastid	66.74	68.65
CDX96450	Canola	plastid	66.28	68.01
KRH23699	Soybean	plastid	66.51	67.29
AT1G73110.1	Thale cress	plastid	66.74	66.9
CDY59936	Canola	plastid	65.36	66.43
Solyc03g117850.2.1	Tomato	plastid	66.51	65.16
EES10316	Sorghum	plastid	43.42	42.73
EES10317	Sorghum	plastid	42.49	38.9

Protein Annotations

Gene3D:1.10.8.1070	Gene3D:3.40.50.300	MapMan:35.1	EntrezGene:8082528	UniProt:A0A1Z5RFH2	InterPro:ATPase_AAA_core
GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0009507	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579
GO:GO:0016020	EnsemblPlants:OQU82488	ProteinID:OQU82488	ProteinID:OQU82488.1	InterPro:P-loop_NTPase	PFAM:PF00004
PANTHER:PTHR32429	PANTHER:PTHR32429:SF11	EnsemblPlantsGene:SORBI_3006G248700	SUPFAM:SSF52540	UniParc:UPI0001A874B4	RefSeq:XP_002448682.1
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr6:-:58801617..58807226

Molecular Weight (calculated)

48240.6 Da

IEP (calculated)

8.670

GRAVY (calculated)

-0.448

Length

433 amino acids

Sequence
(BLAST)

001: MATTSVAARS PHPHLSHPRR QNPSTTSTSR ASIRGRLPPI RCSSASSPPP PATGGEEGES GSRRLSKQSS WESKDAEGDD YLYRLGKEAD NLNVTVGARA
101: GIVDDLFVGN FLGKDSDIVF DYRQKATRTF EYLQGDYYIA PAFLDKVACH IVKNYIGHLL NNIKIPLILG VWGGKGQGKT FQTELIFKAM GVEPVIMSAG
201: ELESEKAGEP GRLIRDRYRT ASQVIQNQGK LSCLMINDLD AGVGRFGNTQ MTVNNQIAVG TLMNLADNPN RVSIGQKWRE SDVTHRVPII VTGNDFSTLY
301: APLIRDGRME KFYWQPTRED IISIVHGMYR KDGLSAEEVA RVVDTFPNQA LDFYGALRSR TYDRAILEWV EEIGGHEQLR AKLLKRKKGE ELPTFIAPKP
401: SLEALIESGY SLVKEQELIM NSKLSKEYMK NLE

Best Arabidopsis Sequence Match ( AT1G73110.1 )
(BLAST)

001: MALANISLRF KFPPLQSSSS SSSSFNATLI NTRKLSSIVC SKPSSNDGGK VANDDGGAKP RKKLSEQSSW EVKDSEGKDY LYRLGAESDN VNIAVGARSG
101: MIDDVFIGDF LGKDSDIVFD YRQKATRSFE HLQGDYYIAP SFLDKVAVHI VKNYLAPSLN IKIPLILGIW GGKGQGKTFQ TELIFKTMGV EPVIMSAGEL
201: ESDRAGEPGR LIRDRYRTAS QVIQNQGKMS VLMINDIDAG LGRFGETQMT VNNQIVVGTL MNLADNPTRV SVGQEWREAD MVNRVPLIVT GNDFSTLYAP
301: LIREGRMEKF YWQPTREDIV NIVSRMYEKD GISRKDVISI VDKFPNQALD FYGALRSRTY DRSILKWVDE AGGMETLGKV LLRRKKTQEV PQFTAPEQTV
401: EALLESGYSL INEQKLIMET KLSKEYMKNM DD

Arabidopsis Description

At1g73110/F3N23_39 [Source:UniProtKB/TrEMBL;Acc:Q9AST9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.