Factsheet for PGSC0003DMT400036879

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

plastid 5
cytosol 1
extracellular 3
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	plastid
EpiLoc:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plastid
Predotar:	mitochondrion
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_09s0018g01270.t01	Wine grape	extracellular	80.95	82.64
HORVU0Hr1G005570.3	Barley	cytosol	57.48	74.45
Solyc03g117850.2.1	Tomato	plastid	96.94	64.48
KRH23699	Soybean	plastid	82.65	56.78
GSMUA_Achr10P...	Banana	plastid	78.23	54.76
Bra016017.1-P	Field mustard	mitochondrion, plastid	76.19	53.21
CDX96450	Canola	plastid	76.19	53.08
CDY59936	Canola	plastid	76.53	52.82
AT1G73110.1	Thale cress	plastid	76.53	52.08
OQU82488	Sorghum	plastid	73.81	50.12
Os04t0658300-01	Rice	plastid	74.83	49.89
TraesCS2D01G501700.1	Wheat	plastid	74.49	49.32
TraesCS2B01G529300.1	Wheat	plastid	74.15	49.1
TraesCS2A01G501200.1	Wheat	plastid	73.81	48.98
Zm00001d001995_P003	Maize	plastid	74.83	47.83
PGSC0003DMT400049256	Potato	cytosol, plastid	52.04	35.01
PGSC0003DMT400028767	Potato	plastid	51.36	34.47
PGSC0003DMT400091016	Potato	plastid	11.22	17.93

Protein Annotations

Gene3D:1.10.8.1070	Gene3D:3.40.50.300	MapMan:35.1	InterPro:ATPase_AAA_core	GO:GO:0000166	GO:GO:0003674
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0009507	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0016020	UniProt:M1B4F1
InterPro:P-loop_NTPase	PFAM:PF00004	EnsemblPlantsGene:PGSC0003DMG400014221	PGSC:PGSC0003DMG400014221	EnsemblPlants:PGSC0003DMT400036879	PANTHER:PTHR32429
PANTHER:PTHR32429:SF11	SUPFAM:SSF52540	UniParc:UPI000294D5D7	SEG:seg	:	:

Description

Ribulose bisphosphate carboxylase/oxygenase activase, chloroplast [Source:PGSC_GENE;Acc:PGSC0003DMG400014221]

Coordinates

chr3:-:57453531..57462572

Molecular Weight (calculated)

33247.2 Da

IEP (calculated)

5.471

GRAVY (calculated)

-0.308

Length

294 amino acids

Sequence
(BLAST)

001: MWNLIPAVCH IVKNYISHIL NAKVPLILGV WGGKGQGKSF QTELIFQAMG IEPVIMSAGE LESERAGEPG KLIRERYRTA SQVVQNQGKM SVLMINDIDA
101: GLGRFGNTQV TVNNQIVVGT LMNLCDNPTR VSVGQDWREG DITHRIPIIV TGNDFSTIYA PLIRDGRMEK FYWQPTQEDI VNIVCRMYEK DGITKDEVAT
201: IVNTFPNQAL DFYGAMRSRT YDQSILKWVE DSGGAEDIGR RFLRQRKKGE LPVFIPPEQT VEALLESGHS LTKEQMLIME SKLSKEYMKN MDEE

Best Arabidopsis Sequence Match ( AT1G73110.1 )
(BLAST)

001: MALANISLRF KFPPLQSSSS SSSSFNATLI NTRKLSSIVC SKPSSNDGGK VANDDGGAKP RKKLSEQSSW EVKDSEGKDY LYRLGAESDN VNIAVGARSG
101: MIDDVFIGDF LGKDSDIVFD YRQKATRSFE HLQGDYYIAP SFLDKVAVHI VKNYLAPSLN IKIPLILGIW GGKGQGKTFQ TELIFKTMGV EPVIMSAGEL
201: ESDRAGEPGR LIRDRYRTAS QVIQNQGKMS VLMINDIDAG LGRFGETQMT VNNQIVVGTL MNLADNPTRV SVGQEWREAD MVNRVPLIVT GNDFSTLYAP
301: LIREGRMEKF YWQPTREDIV NIVSRMYEKD GISRKDVISI VDKFPNQALD FYGALRSRTY DRSILKWVDE AGGMETLGKV LLRRKKTQEV PQFTAPEQTV
401: EALLESGYSL INEQKLIMET KLSKEYMKNM DD

Arabidopsis Description

At1g73110/F3N23_39 [Source:UniProtKB/TrEMBL;Acc:Q9AST9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.