Factsheet for Solyc09g011080.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

plastid: 20363867
nucleus: 25464976
plastid: 26371478
plastid: 28183294
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

msms PMID: 28183294 doi

R Tamburino, M Vitale, A Ruggiero, M Sassi, L Sannino, S Arena, A Costa, G Batelli, N Zambrano, A Scaloni, S Grillo, N Scotti

Center of Genetics Engineering (CEINGE) Biotecnologie Avanzate S.c. a R.l, via Pansini, 80100, Napoli, Italy., Department of Molecular Medicine and Medical Biotechnology, University of Naples Federico II, via Pansini, 80100, Napoli, Italy., Institute for the Animal Production System in the Mediterranean Environment, National Research Council of Italy (CNR-ISPAAM), via Argine 1085, 80147, Napoli, Italy., Institute of Biosciences and BioResources, National Research Council of Italy (CNR-IBBR), via Università 133, 80055, Portici, NA, Italy., Institute of Biosciences and BioResources, National Research Council of Italy (CNR-IBBR), via Università 133, 80055, Portici, NA, Italy. nscotti@unina.it.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g086580.1.1	Tomato	plastid	86.1	84.94
GSMUA_Achr11P...	Banana	plasma membrane, plastid	78.82	79.0
KRG97874	Soybean	plastid	79.5	78.78
GSMUA_Achr10P...	Banana	plastid	72.89	78.62
KRH31002	Soybean	nucleus, plastid	79.04	78.33
VIT_13s0019g02050.t01	Wine grape	plastid	78.13	78.31
Os11t0707000-02	Rice	plastid	76.08	77.14
TraesCS4A01G177600.1	Wheat	plastid	75.17	76.39
TraesCS4D01G134900.1	Wheat	plastid	75.17	76.39
Bra017055.1-P	Field mustard	plastid	76.99	76.3
VIT_06s0004g05180.t01	Wine grape	plastid	81.55	75.85
TraesCS4B01G140200.1	Wheat	plastid	74.26	75.46
KRH73060	Soybean	nucleus, plastid	81.32	74.69
Zm00001d048593_P001	Maize	plastid	72.89	73.9
KRH15079	Soybean	nucleus, plastid	80.41	73.85
EES10316	Sorghum	plastid	72.44	72.27
GSMUA_Achr2P16450_001	Banana	plastid	78.13	72.21
Bra005019.1-P	Field mustard	plastid	76.99	71.16
AT2G39730.1	Thale cress	plastid	76.54	70.89
Bra000144.1-P	Field mustard	plastid	76.31	70.53
TraesCS4A01G177500.1	Wheat	plastid	73.58	69.61
TraesCS4D01G135000.9	Wheat	plastid	73.35	69.4
HORVU4Hr1G027260.12	Barley	cytosol	73.58	69.31
TraesCS4B01G140300.1	Wheat	plastid	73.12	69.18
Zm00001d048592_P001	Maize	plastid	69.7	66.09
EES10317	Sorghum	plastid	70.16	65.12
KRH75848	Soybean	endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole	17.08	63.56
KRH55240	Soybean	cytosol	10.25	54.88
Solyc11g027920.1.1	Tomato	cytosol	12.53	47.83
CDY58991	Canola	cytosol	8.43	45.12
Solyc03g117850.2.1	Tomato	plastid	40.55	40.27
Os11t0707100-00	Rice	golgi, mitochondrion, plastid	16.86	37.0
Os11t0707050-00	Rice	cytosol, nucleus, plastid	5.92	36.11

Protein Annotations

Gene3D:1.10.8.1070	MapMan:1.2.1.3.2	Gene3D:3.40.50.300	InterPro:ATPase_AAA_core	ncoils:Coil	GO:GO:0000166
GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0008150	GO:GO:0009536	GO:GO:0009570	GO:GO:0009579	GO:GO:0030234
GO:GO:0043085	GO:GO:0046863	UniProt:K4CRD4	InterPro:P-loop_NTPase	PFAM:PF00004	PANTHER:PTHR32429
PANTHER:PTHR32429:SF8	SUPFAM:SSF52540	EnsemblPlantsGene:Solyc09g011080.2	EnsemblPlants:Solyc09g011080.2.1	UniParc:UPI000276B134	:

Description

No Description!

Coordinates

chr9:-:4413327..4416467

Molecular Weight (calculated)

48629.2 Da

IEP (calculated)

8.265

GRAVY (calculated)

-0.372

Length

439 amino acids

Sequence
(BLAST)

001: MATSISTIGA VNKLSLNNSV VGTSVPPTAF FGKTLKKVNN KVSSTNISNK NLRLVAQEKE IDEKKQTDGD RWKGLVNDVS DDQQDIARGK GLVDSLFQAP
101: TGTGTHHAIM NSYEYLSQGL RQYNLDNKLD GFYIAPAFMD KLVVHITKNF LTLPNIKVPL ILGVWGGKGQ GKSFQCELVF RKMGINPIMM SAGELESGNA
201: GEPAKLIRQR YREAAEIIRK GNMCCLFIND LDAGAGRMGG TTQYTVNNQM VNATLMNIAD NPTNVQLPGM YNKQENARVP IIVTGNDFST LYAPLIRDGR
301: MEKFYWAPTR EDRIGVCKGI FRTDRVPDDD IVKIVDSFPG QSIDFFGALR ARVYDDEVRK WIGSTGIEQI GEKLLNSRDG PPTFEQPKMT IDKLLEYGNM
401: LVQEQENVKR VQLADKYLKE AALGDANADS INNGSFFAS

Best Arabidopsis Sequence Match ( AT2G39730.2 )
(BLAST)

001: MAAAVSTVGA INRAPLSLNG SGSGAVSAPA STFLGKKVVT VSRFAQSNKK SNGSFKVLAV KEDKQTDGDR WRGLAYDTSD DQQDITRGKG MVDSVFQAPM
101: GTGTHHAVLS SYEYVSQGLR QYNLDNMMDG FYIAPAFMDK LVVHITKNFL TLPNIKVPLI LGIWGGKGQG KSFQCELVMA KMGINPIMMS AGELESGNAG
201: EPAKLIRQRY REAADLIKKG KMCCLFINDL DAGAGRMGGT TQYTVNNQMV NATLMNIADN PTNVQLPGMY NKEENARVPI ICTGNDFSTL YAPLIRDGRM
301: EKFYWAPTRE DRIGVCKGIF RTDKIKDEDI VTLVDQFPGQ SIDFFGALRA RVYDDEVRKF VESLGVEKIG KRLVNSREGP PVFEQPEMTY EKLMEYGNML
401: VMEQENVKRV QLAETYLSQA ALGDANADAI GRGTFYGKTE EKEPSK

Arabidopsis Description

RCARibulose bisphosphate carboxylase/oxygenase activase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P10896]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.