Factsheet for TraesCS4B01G140300.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 22160430
golgi: 25769308
plastid: 28542341

msms PMID: 22160430 doi

AH Kamal, K Cho, S Komatsu, N Uozumi, JS Choi, SH Woo

Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk, 361-763, Korea.

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

msms PMID: 28542341 doi

K Shi, J Gu, H Guo, L Zhao, Y Xie, H Xiong, J Li, S Zhao, X Song, L Liu

National Key Facility for Crop Gene Resources and Genetic Improvement, Institute of Crop Sciences, Chinese Academy of Agricultural Sciences, Beijing, China., School of Life Sciences, Qingdao Agricultural University, Qingdao, Shandong, China.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G325600.1
TraesCS1B01G338800.1
TraesCS1B01G339000.1
TraesCS1D01G327500.1
TraesCS7A01G562100.1
TraesCS7D01G001000.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G39730.1	TraesCS1A01G325600.1	AT5G42980.1	15352244
AT2G39730.1	TraesCS1B01G338800.1	AT5G42980.1	15352244
AT2G39730.1	TraesCS1B01G339000.1	AT5G42980.1	15352244
AT2G39730.1	TraesCS1D01G327500.1	AT5G42980.1	15352244
AT2G39730.1	TraesCS7A01G562100.1	AT5G42980.1	15352244
AT2G39730.1	TraesCS7D01G001000.1	AT5G42980.1	15352244

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G177500.1	Wheat	plastid	99.57	99.57
TraesCS4D01G135000.9	Wheat	plastid	99.35	99.35
Os11t0707000-02	Rice	plastid	82.76	88.68
HORVU4Hr1G027260.12	Barley	cytosol	87.93	87.55
TraesCS4B01G140200.1	Wheat	plastid	78.66	84.49
Zm00001d048593_P001	Maize	plastid	74.35	79.68
EES10316	Sorghum	plastid	73.71	77.73
CDX74838	Canola	plastid	77.16	76.5
VIT_08s0007g00840.t01	Wine grape	plastid	78.02	76.37
CDY20474	Canola	plastid	76.72	76.07
GSMUA_Achr11P...	Banana	plasma membrane, plastid	71.34	75.57
GSMUA_Achr10P...	Banana	plastid	66.16	75.43
GSMUA_Achr2P16450_001	Banana	plastid	77.16	75.37
AT2G39730.1	Thale cress	plastid	76.94	75.32
KRH73060	Soybean	nucleus, plastid	77.59	75.31
KRH15079	Soybean	nucleus, plastid	77.37	75.1
CDY24950	Canola	plastid	76.51	74.74
CDY07640	Canola	plastid	76.51	74.74
Bra005019.1-P	Field mustard	plastid	76.51	74.74
VIT_06s0004g05180.t01	Wine grape	plastid	75.86	74.58
VIT_13s0019g02050.t01	Wine grape	plastid	70.04	74.2
KRH31002	Soybean	nucleus, plastid	70.69	74.04
CDX93240	Canola	plastid	70.04	74.03
Zm00001d048592_P001	Maize	plastid	73.71	73.87
KRH65878	Soybean	plastid	75.43	73.84
KRG97874	Soybean	plastid	70.47	73.81
Bra000144.1-P	Field mustard	plastid	75.43	73.68
PGSC0003DMT400049256	Potato	cytosol, plastid	69.18	73.46
Solyc09g011080.2.1	Tomato	plastid	69.18	73.12
Bra017055.1-P	Field mustard	plastid	69.61	72.91
PGSC0003DMT400028767	Potato	plastid	68.53	72.6
Solyc10g086580.1.1	Tomato	plastid	69.61	72.58
EES10317	Sorghum	plastid	73.71	72.3
KRH75848	Soybean	endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole	14.66	57.63
CDY68720	Canola	cytosol	14.66	56.67
KRH55240	Soybean	cytosol	9.91	56.1
CDY21872	Canola	cytosol	14.87	53.91
TraesCS2B01G529300.1	Wheat	plastid	39.66	41.44
PGSC0003DMT400091016	Potato	plastid	12.93	32.61

Protein Annotations

EnsemblPlants:TraesCS4B01G140300.1	EnsemblPlantsGene:TraesCS4B01G140300	Gene3D:1.10.8.1070	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674
GO:GO:0005488	GO:GO:0005524	InterPro:ATPase_AAA_core	InterPro:P-loop_NTPase	PANTHER:PTHR32429	PANTHER:PTHR32429:SF8
PFAM:PF00004	SUPFAM:SSF52540	MapMan:1.2.1.3.2	:	:	:

Description

No Description!

Coordinates

chr4B:+:184607712..184609757

Molecular Weight (calculated)

50956.8 Da

IEP (calculated)

7.363

GRAVY (calculated)

-0.378

Length

464 amino acids

Sequence
(BLAST)

001: MAAAFSSTVG APASTPTNFL GKKLKKQVTS AVNYHGKSSK ANRFTVMAAE NLDEKRNTDK WKGLAYDISD DQQDITRGKG IVDSLFQAPT GDGTHEAVLS
101: SYEYVSQGLK KYDFDNTMGG FYIAPAFMDK LVVHLSKNFM TLPNIKIPLI LGIWGGKGQG KSFQCELVFA KMGINPIMMS AGELESGNAG EPAKLIRQRY
201: REAADMIKKG KMCCLFINDL DAGAGRMGGT TQYTVNNQMV NATLMNIADA PTNVQLPGMY NKEENPRVPI VVTGNDFSTL YAPLIRDGRM EKFYWAPTRD
301: DRIGVCKGIF QTDNVSDESV VKIVDTFPGQ SIDFFGALRA RVYDDEVRKW VTSTGIENIG KRLVNSRDGP VTFEQPKMTV EKLLEYGHML VQEQDNVKRV
401: QLADTYMSQA ALGDANQDAM KTGSFYGKGA QQGTLPVPAG CTDQTAKNFD PTARSDDGSC LYTF

Best Arabidopsis Sequence Match ( AT2G39730.1 )
(BLAST)

001: MAAAVSTVGA INRAPLSLNG SGSGAVSAPA STFLGKKVVT VSRFAQSNKK SNGSFKVLAV KEDKQTDGDR WRGLAYDTSD DQQDITRGKG MVDSVFQAPM
101: GTGTHHAVLS SYEYVSQGLR QYNLDNMMDG FYIAPAFMDK LVVHITKNFL TLPNIKVPLI LGIWGGKGQG KSFQCELVMA KMGINPIMMS AGELESGNAG
201: EPAKLIRQRY REAADLIKKG KMCCLFINDL DAGAGRMGGT TQYTVNNQMV NATLMNIADN PTNVQLPGMY NKEENARVPI ICTGNDFSTL YAPLIRDGRM
301: EKFYWAPTRE DRIGVCKGIF RTDKIKDEDI VTLVDQFPGQ SIDFFGALRA RVYDDEVRKF VESLGVEKIG KRLVNSREGP PVFEQPEMTY EKLMEYGNML
401: VMEQENVKRV QLAETYLSQA ALGDANADAI GRGTFYGKGA QQVNLPVPEG CTDPVAENFD PTARSDDGTC VYNF

Arabidopsis Description

RCARibulose bisphosphate carboxylase/oxygenase activase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P10896]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.