Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH76717 | Soybean | endoplasmic reticulum, nucleus | 51.89 | 45.83 |
| TraesCS7D01G001000.1 | Wheat | cytosol | 48.11 | 45.13 |
| KRH51778 | Soybean | endoplasmic reticulum | 49.06 | 44.44 |
| Solyc04g080850.2.1 | Tomato | extracellular | 50.94 | 43.9 |
| PGSC0003DMT400009623 | Potato | cytosol | 50.94 | 43.9 |
| VIT_18s0001g13250.t01 | Wine grape | cytosol | 47.17 | 43.86 |
| GSMUA_Achr4P22400_001 | Banana | cytosol, unclear | 47.17 | 43.86 |
| KRH61100 | Soybean | cytosol | 48.11 | 43.59 |
| AT1G45145.1 | Thale cress | cytosol | 48.11 | 43.22 |
| Bra036335.1-P | Field mustard | cytosol | 47.17 | 42.73 |
| KRH28739 | Soybean | cytosol | 48.11 | 42.5 |
| VIT_04s0023g02700.t01 | Wine grape | cytosol | 45.28 | 41.74 |
| Bra014037.1-P | Field mustard | cytosol | 46.23 | 41.53 |
| AT5G42980.1 | Thale cress | cytosol | 46.23 | 41.53 |
| CDY53958 | Canola | cytosol | 45.28 | 41.03 |
| CDY36029 | Canola | cytosol | 45.28 | 40.68 |
| CDY29406 | Canola | cytosol | 45.28 | 40.34 |
| CDY39355 | Canola | cytosol | 45.28 | 40.34 |
| Bra025762.1-P | Field mustard | cytosol | 45.28 | 40.34 |
| Solyc02g084710.2.1 | Tomato | extracellular | 44.34 | 39.83 |
| PGSC0003DMT400009306 | Potato | cytosol | 44.34 | 39.83 |
| TraesCS2A01G243200.1 | Wheat | cytosol, golgi, plastid | 44.34 | 39.83 |
| TraesCS1A01G325600.1 | Wheat | cytosol | 48.11 | 39.23 |
| CDY32970 | Canola | cytosol | 45.28 | 39.02 |
| Bra027469.1-P | Field mustard | cytosol | 45.28 | 39.02 |
| CDY43592 | Canola | cytosol | 45.28 | 39.02 |
| GSMUA_Achr2P17610_001 | Banana | cytosol | 41.51 | 38.6 |
| AT1G19730.1 | Thale cress | cytosol | 42.45 | 37.82 |
| KRH05879 | Soybean | endoplasmic reticulum | 42.45 | 36.59 |
| KRH15131 | Soybean | cytosol, nucleus | 39.62 | 35.29 |
| TraesCS5A01G448200.1 | Wheat | cytosol | 41.51 | 33.59 |
| VIT_18s0001g13240.t01 | Wine grape | cytosol | 44.34 | 29.75 |
| TraesCS1A01G112400.1 | Wheat | cytosol | 34.91 | 28.24 |
| TraesCS1A01G301500.1 | Wheat | cytosol | 33.02 | 24.48 |
| TraesCS2A01G480300.1 | Wheat | cytosol | 25.47 | 19.42 |
| TraesCS3A01G418400.1 | Wheat | plastid | 25.47 | 14.29 |
Protein Annotations
| EnsemblPlants:TraesCS7A01G562100.1 | EnsemblPlantsGene:TraesCS7A01G562100 | Gene3D:3.40.30.10 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0006662 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0015035 | GO:GO:0019725 | GO:GO:0045454 |
| InterPro:IPR013766 | InterPro:Thioredoxin | InterPro:Thioredoxin-like_sf | InterPro:Thioredoxin_domain | PANTHER:PTHR10438 | PANTHER:PTHR10438:SF293 |
| PFAM:PF00085 | PFscan:PS51352 | SUPFAM:SSF52833 | TIGR:cd02947 | MapMan:10.6.1 | : |
Description
No Description!
Coordinates
chr7A:-:732943541..732944457
Molecular Weight (calculated)
12089.9 Da
IEP (calculated)
6.252
GRAVY (calculated)
0.237
Length
106 amino acids
Sequence
(BLAST)
(BLAST)
001: MGEVIAIHSL EELATVSRNK LVVVYFSATW SEPCRLISPV FHDLAKKLTN VTFLEVDVDE IKLLSLKFNV SIMPTFVFVK ERVLVDQVSR ASKDELENKI
101: EKHMIA
101: EKHMIA
001: MAGEGEVIAC HTLEVWNEKV KDANESKKLI VIDFTASWCP PCRFIAPVFA EMAKKFTNVV FFKIDVDELQ AVAQEFKVEA MPTFVFMKEG NIIDRVVGAA
101: KDEINEKLMK HGGLVASA
101: KDEINEKLMK HGGLVASA
Arabidopsis Description
TRX5Thioredoxin H5 [Source:UniProtKB/Swiss-Prot;Acc:Q39241]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.