Factsheet for TraesCS2D01G175200.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

plastid 1
mitochondrion 7

Predictors

GFP

MS/MS

Papers

golgi: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G325600.1
TraesCS1B01G338800.1
TraesCS1B01G339000.1
TraesCS1D01G327500.1
TraesCS7A01G562100.1
TraesCS7D01G001000.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G17290.1	TraesCS1A01G325600.1	AT5G42980.1	15352244
AT1G17290.1	TraesCS1B01G338800.1	AT5G42980.1	15352244
AT1G17290.1	TraesCS1B01G339000.1	AT5G42980.1	15352244
AT1G17290.1	TraesCS1D01G327500.1	AT5G42980.1	15352244
AT1G17290.1	TraesCS7A01G562100.1	AT5G42980.1	15352244
AT1G17290.1	TraesCS7D01G001000.1	AT5G42980.1	15352244

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G167500.1	Wheat	mitochondrion	98.74	98.92
TraesCS2B01G193600.1	Wheat	mitochondrion	99.1	98.4
HORVU2Hr1G030820.1	Barley	mitochondrion	96.77	96.77
Os07t0617800-01	Rice	mitochondrion	55.3	93.62
EER99708	Sorghum	mitochondrion	87.07	89.65
Zm00001d022152_P001	Maize	mitochondrion	85.64	88.17
Zm00001d003953_P001	Maize	cytosol	13.64	85.39
Zm00001d044135_P001	Maize	cytosol	8.26	82.14
Zm00001d006875_P001	Maize	plastid	82.05	81.75
TraesCS1D01G086700.1	Wheat	cytosol	56.19	77.86
PGSC0003DMT400012549	Potato	cytosol, mitochondrion	66.97	76.59
VIT_09s0002g00340.t01	Wine grape	mitochondrion	70.92	75.1
Solyc03g123600.2.1	Tomato	cytosol	64.99	74.79
KRH06285	Soybean	mitochondrion	68.4	71.08
AT1G17290.1	Thale cress	mitochondrion	68.94	70.72
KRH47719	Soybean	endoplasmic reticulum	68.4	70.43
Bra025984.1-P	Field mustard	cytosol, mitochondrion	67.86	70.39
CDY26256	Canola	mitochondrion	67.68	70.2
AT1G72330.3	Thale cress	mitochondrion	69.66	70.16
CDX96776	Canola	mitochondrion	67.86	69.74
CDX83914	Canola	mitochondrion	67.68	69.69
CDY48485	Canola	plastid	67.5	69.63
CDX81815	Canola	mitochondrion	68.58	69.58
Bra016607.1-P	Field mustard	mitochondrion	67.68	69.56
Bra026675.1-P	Field mustard	mitochondrion	68.22	69.34
CDY21752	Canola	mitochondrion	68.04	69.29
Solyc06g063090.2.1	Tomato	extracellular	67.15	69.0
CDX68271	Canola	mitochondrion	14.9	64.84
TraesCS5D01G070800.1	Wheat	cytosol	55.3	63.37
TraesCS5D01G224200.1	Wheat	cytosol	54.94	61.94
Solyc03g123610.2.1	Tomato	plastid	65.35	60.07
Zm00001d032984_P001	Maize	mitochondrion	35.19	59.94
CDY50645	Canola	cytosol	20.65	53.24
CDX83913	Canola	cytosol, nucleus, peroxisome	11.13	48.44
TraesCS2D01G262400.2	Wheat	cytosol	40.57	45.29
Zm00001d008277_P001	Maize	cytosol	27.83	36.38
CDX68272	Canola	nucleus	7.0	35.14
TraesCS3D01G108700.1	Wheat	cytosol, plastid	15.8	19.47
TraesCS4D01G058200.1	Wheat	cytosol	15.44	17.73
TraesCS7D01G060600.2	Wheat	golgi, mitochondrion	15.62	16.99
TraesCS2D01G394200.1	Wheat	cytosol	14.72	16.87

Protein Annotations

Gene3D:3.40.640.10	Gene3D:3.90.1150.10	MapMan:4.1.3.1.1	InterPro:Aminotransferase_I/II	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0030170	InterPro:IPR015421
InterPro:IPR015422	PFAM:PF00155	PANTHER:PTHR11751	PANTHER:PTHR11751:SF466	InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_dom1
InterPro:PyrdxlP-dep_Trfase_major	SUPFAM:SSF53383	EnsemblPlantsGene:TraesCS2D01G175200	EnsemblPlants:TraesCS2D01G175200.1	TIGR:cd00609	SEG:seg

Description

No Description!

Coordinates

chr2D:-:118555588..118560301

Molecular Weight (calculated)

60661.2 Da

IEP (calculated)

5.793

GRAVY (calculated)

-0.213

Length

557 amino acids

Sequence
(BLAST)

001: MRRFLTDRAR RAVAASLRGA TRPAAPSPAP AAALSRPSPS APSAMAAYMA RAMSTSAAGT PPVSLDTINP KVLEFKYAVR GEIVTHAQNL EQELHKNPES
101: LPFDEILYCN IGNPHSLGQQ PVTFFREVLS LCDHPALLDK SETHALYSSD AIERAWQILE KIPGRATGAY SHSQGVKGLR DEIAAGIAAR DGFHASGDNI
201: FLTDGASPAV HMMMQLLIRS EKDGILCPLP QYPLYSASIA LHGGSFVPYF LDEETGWGLE VDELKKQVDE ARSKGITVRA LVVINPGNPT GQVLAEENQK
301: KIVEFCKNEG LVLLADEVYQ ENIYVEDKQF HSFKKIARSM GYTDDDLPLV SFQSVSKGYY GECGKRGGYM EVTGFNADVR EQIYKVASVN LCSNISGQIL
401: SSLIMNPPKV GDESYESFMV ERDGIISSLA RRAKALEEAF NSLEGITCNK AEGAMYLFPR LHLPQKAIGA AQAAGAAPDA YYALRLLQAT GIVVVPGSGF
501: GQAPGTYHFR CTILPQEDKI PAIISRFKEF HEKFMDEFRD VSRDEAPTGA TIESGGD

Best Arabidopsis Sequence Match ( AT1G72330.1 )
(BLAST)

001: MRRFLINQAK GLVDHSRRQH HHKSPSFLSP QPRPLASSPP ALSRFFSSTS EMSASDSTSS LPVTLDSINP KVLKCEYAVR GEIVNIAQKL QEDLKTNKDA
101: YPFDEIIYCN IGNPQSLGQL PIKFFREVLA LCDHASLLDE SETHGLFSTD SIDRAWRILD HIPGRATGAY SHSQGIKGLR DVIAAGIEAR DGFPADPNDI
201: FLTDGASPAV HMMMQLLLSS EKDGILSPIP QYPLYSASIA LHGGSLVPYY LDEATGWGLE ISDLKKQLEE ARSKGISVRA LVVINPGNPT GQVLAEENQR
301: DIVNFCKQEG LVLLADEVYQ ENVYVPDKKF HSFKKVARSL GYGEKDISLV SFQSVSKGYY GECGKRGGYM EVTGFTSDVR EQIYKMASVN LCSNISGQIL
401: ASLVMSPPKP GDDSYDSYMA ERDGILSSMA KRAKTLEDAL NSLEGVTCNR AEGAMYLFPR INLPQKAIEA AEAEKTAPDA FYCKRLLNAT GVVVVPGSGF
501: GQVPGTWHFR CTILPQEDKI PAIVNRLTEF HKSFMDEFRN

Arabidopsis Description

ALAAT2alanine aminotransferase 2 [Source:TAIR;Acc:AT1G72330]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.