Factsheet for TraesCS2D01G262400.2

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G325600.1
TraesCS1B01G338800.1
TraesCS1B01G339000.1
TraesCS1D01G327500.1
TraesCS7A01G562100.1
TraesCS7D01G001000.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G23310.1	TraesCS1A01G325600.1	AT5G42980.1	15352244
AT1G23310.1	TraesCS1B01G338800.1	AT5G42980.1	15352244
AT1G23310.1	TraesCS1B01G339000.1	AT5G42980.1	15352244
AT1G23310.1	TraesCS1D01G327500.1	AT5G42980.1	15352244
AT1G23310.1	TraesCS7A01G562100.1	AT5G42980.1	15352244
AT1G23310.1	TraesCS7D01G001000.1	AT5G42980.1	15352244

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2B01G280600.1	Wheat	plastid	89.18	92.9
TraesCS2A01G261600.1	Wheat	peroxisome	89.18	92.9
CDY25781	Canola	cytosol	10.22	87.93
HORVU2Hr1G063740.6	Barley	peroxisome, vacuole	84.97	87.24
Os07t0108300-01	Rice	extracellular, nucleus, plasma membrane	82.16	84.54
Zm00001d007937_P001	Maize	mitochondrion	78.96	82.25
KXG34265	Sorghum	cytosol	78.16	81.59
GSMUA_Achr6P29540_001	Banana	cytosol	78.36	81.29
VIT_00s0225g00130.t01	Wine grape	cytosol	77.76	80.67
GSMUA_Achr8P15810_001	Banana	cytosol	76.75	79.63
CDY61225	Canola	peroxisome	75.95	78.79
Bra016202.1-P	Field mustard	cytosol	75.95	78.63
PGSC0003DMT400047918	Potato	cytosol	75.75	78.59
Solyc05g013380.2.1	Tomato	extracellular, nucleus, plastid	75.55	78.38
CDY04729	Canola	cytosol	74.95	78.24
Bra024580.1-P	Field mustard	cytosol	74.95	78.24
CDY44130	Canola	cytosol	74.95	78.24
AT1G70580.1	Thale cress	cytosol, nucleus, peroxisome	75.35	78.17
Bra016353.1-P	Field mustard	cytosol	74.75	78.03
AT1G23310.1	Thale cress	cytosol	75.15	77.96
KRH69622	Soybean	cytosol	75.15	77.96
CDY66294	Canola	cytosol	75.15	77.96
CDY41452	Canola	peroxisome	74.55	77.82
Solyc01g007940.2.1	Tomato	cytosol	73.75	77.8
KRH74536	Soybean	cytosol	74.15	76.92
CDX86159	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	20.04	76.34
CDX91589	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	20.04	76.34
CDX88411	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	20.04	76.34
Bra012371.1-P	Field mustard	cytosol	69.54	76.1
CDX91708	Canola	peroxisome	60.52	74.94
CDY25780	Canola	peroxisome	60.32	74.69
CDY12474	Canola	peroxisome, plastid	70.74	65.74
PGSC0003DMT400042202	Potato	cytosol, mitochondrion, peroxisome, plastid	9.22	54.12
TraesCS1D01G086700.1	Wheat	cytosol	39.68	49.25
Bra009959.1-P	Field mustard	cytosol, peroxisome, plasma membrane	31.26	45.35
TraesCS5D01G070800.1	Wheat	cytosol	41.28	42.39
TraesCS5D01G224200.1	Wheat	cytosol	41.68	42.11
TraesCS2D01G175200.1	Wheat	golgi	45.29	40.57
CDX86161	Canola	cytosol	6.01	22.73
TraesCS3D01G108700.1	Wheat	cytosol, plastid	16.43	18.14
TraesCS2D01G394200.1	Wheat	cytosol	16.43	16.87
TraesCS4D01G058200.1	Wheat	cytosol	16.23	16.7
TraesCS7D01G060600.2	Wheat	golgi, mitochondrion	16.83	16.41

Protein Annotations

EnsemblPlants:TraesCS2D01G262400.2	EnsemblPlantsGene:TraesCS2D01G262400	Gene3D:3.40.640.10	Gene3D:3.90.1150.10	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0030170	InterPro:Aminotransferase_I/II
InterPro:IPR015421	InterPro:IPR015422	InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_dom1	InterPro:PyrdxlP-dep_Trfase_major	PANTHER:PTHR11751
PANTHER:PTHR11751:SF373	PFAM:PF00155	SUPFAM:SSF53383	TIGR:cd00609	MapMan:1.3.3.1	:

Description

No Description!

Coordinates

chr2D:-:318563566..318567577

Molecular Weight (calculated)

55483.3 Da

IEP (calculated)

7.740

GRAVY (calculated)

-0.114

Length

499 amino acids

Sequence
(BLAST)

001: MMGRKALDYE ELNENVKKVQ YAVRGELYLR ASELQKEGKR IIFTNVGNPH ALGQKPLTFP RQVVALCQAP FLLDDPNVGL IFPADAIARA KHYLSLAPGG
101: LGAYSDSRGI PGVRQEVAEF IQRRDGYPSD PELIYLTDGA SKGVMQMLNA IIRNERDGIL VPVPQYPLYS AAISLFGGSL VPYYLEEEAN WGLDLVSTRQ
201: SVAEARSKGI TVRAMVIINP GNPTGQCLSE ANIRELLNFC YQENLVLLAD EVYQQNVYQD ERPFISARKV MFDMGPPVSR EVQLISFHTV SKGYWGECGQ
301: RGGYFEMTNI PPKTVDEIYK VASIALSPNV PGQIFMGLMV NPPKPGDISY LKYSAESKSI LESLRRRAQI MTDGFNSCRN VVCNFTEGAM YSFPQIRLPQ
401: RAMDVAKSAG KAPDVYYCLK LLEATGISTV PGSGFGQKEG YGGVEVKHDK LGIREQWPII SVLIHMETVT ALWAYLIMNL IRMGMGRPAP AWTWFLLLP

Best Arabidopsis Sequence Match ( AT1G23310.1 )
(BLAST)

001: MALKALDYDT LNENVKKCQY AVRGELYLRA SELQKEGKKI IFTNVGNPHA LGQKPLTFPR QVVALCQAPF LLDDPNVGML FPADAIARAK HYLSLTSGGL
101: GAYSDSRGLP GVRKEVAEFI QRRDGYPSDP ELIFLTDGAS KGVMQILNCV IRGNGDGILV PVPQYPLYSA TISLLGGTLV PYYLDESENW GLDVANLRQS
201: VAQARSQGIT VRAMVIINPG NPTGQCLSEA NIREILKFCY NEKLVLLGDE VYQQNIYQDE RPFISSKKVL MEMGSPFSKE VQLVSFHTVS KGYWGECGQR
301: GGYFEMTNLP PRVVEEIYKV ASIALSPNVS AQIFMGLMVN PPKPGDISYD QFARESKGIL ESLRRRARLM TDGFNSCKNV VCNFTEGAMY SFPQIRLPTG
401: ALQAAKQAGK VPDVFYCLKL LEATGISTVP GSGFGQKEGV FHLRTTILPA EDEMPEIMDS FKKFNDEFMT QYDNNFGYSK M

Arabidopsis Description

GGAT1Glutamate--glyoxylate aminotransferase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LR30]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.