Factsheet for Bra024580.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
peroxisome 3
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra027469.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G23310.1	Bra027469.1-P	AT5G42980.1	15352244

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY04729	Canola	cytosol	100.0	100.0
CDY44130	Canola	cytosol	100.0	100.0
Bra016353.1-P	Field mustard	cytosol	97.07	97.07
Bra012371.1-P	Field mustard	cytosol	92.26	96.71
AT1G23310.1	Thale cress	cytosol	94.77	94.18
Bra016202.1-P	Field mustard	cytosol	93.31	92.53
PGSC0003DMT400042202	Potato	cytosol, mitochondrion, peroxisome, plastid	15.48	87.06
VIT_00s0225g00130.t01	Wine grape	cytosol	87.45	86.9
PGSC0003DMT400047918	Potato	cytosol	85.77	85.24
KRH69622	Soybean	cytosol	85.77	85.24
Solyc05g013380.2.1	Tomato	extracellular, nucleus, plastid	85.56	85.03
KRH74536	Soybean	cytosol	85.36	84.82
Solyc01g007940.2.1	Tomato	cytosol	83.68	84.57
GSMUA_Achr6P29540_001	Banana	cytosol	84.94	84.41
GSMUA_Achr8P15810_001	Banana	cytosol	84.52	83.99
TraesCS2B01G280600.1	Wheat	plastid	83.47	83.3
TraesCS2A01G261600.1	Wheat	peroxisome	83.47	83.3
Os07t0108300-01	Rice	extracellular, nucleus, plasma membrane	84.31	83.09
KXG34265	Sorghum	cytosol	80.96	80.96
Zm00001d007937_P001	Maize	mitochondrion	80.75	80.58
HORVU2Hr1G063740.6	Barley	peroxisome, vacuole	80.75	79.42
TraesCS2D01G262400.2	Wheat	cytosol	78.24	74.95
Bra009959.1-P	Field mustard	cytosol, peroxisome, plasma membrane	39.54	54.94
Bra016607.1-P	Field mustard	mitochondrion	51.67	45.57
Bra025984.1-P	Field mustard	cytosol, mitochondrion	51.05	45.44
Bra026675.1-P	Field mustard	mitochondrion	51.05	44.53
Bra026456.1-P	Field mustard	cytosol	19.87	21.21
Bra019117.1-P	Field mustard	cytosol	19.87	21.06
Bra012924.1-P	Field mustard	cytosol	20.08	20.43
Bra017962.1-P	Field mustard	cytosol	19.87	20.21
Bra024420.1-P	Field mustard	cytosol	19.46	19.79
Bra031846.1-P	Field mustard	cytosol	19.46	19.79
Bra030199.1-P	Field mustard	cytosol	19.25	19.41
Bra011784.1-P	Field mustard	cytosol	19.04	19.4
Bra037829.1-P	Field mustard	cytosol	17.78	19.36
Bra035236.1-P	Field mustard	cytosol	19.67	19.26
Bra010611.1-P	Field mustard	cytosol	18.62	18.98
Bra007611.1-P	Field mustard	cytosol	18.62	18.82
Bra000637.1-P	Field mustard	cytosol	17.99	18.53
Bra022560.1-P	Field mustard	mitochondrion, plastid	19.25	18.4
Bra033261.1-P	Field mustard	cytosol	18.62	17.84
Bra027008.1-P	Field mustard	cytosol	19.46	17.13

Protein Annotations

MapMan:1.3.3.1	Gene3D:3.40.640.10	Gene3D:3.90.1150.10	InterPro:Aminotransferase_I/II	EnsemblPlantsGene:Bra024580	EnsemblPlants:Bra024580.1
EnsemblPlants:Bra024580.1-P	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0030170	InterPro:IPR015421	InterPro:IPR015422	UniProt:M4E725	PFAM:PF00155
PANTHER:PTHR11751	PANTHER:PTHR11751:SF373	InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_dom1	InterPro:PyrdxlP-dep_Trfase_major	SUPFAM:SSF53383
UniParc:UPI00025429F8	:	:	:	:	:

Description

AT1G23310 (E=1e-269) GGT1, AOAT1 | GGT1 (GLUTAMATE:GLYOXYLATE AMINOTRANSFERASE); L-alanine:2-oxoglutarate aminotransferase/ glycine:2-oxoglutarate aminotransferase

Coordinates

chrA09:+:24282410..24284895

Molecular Weight (calculated)

53072.0 Da

IEP (calculated)

6.666

GRAVY (calculated)

-0.198

Length

478 amino acids

Sequence
(BLAST)

001: MALEYESLNE NVKKCQYAVR GELYLRASEL QKEGKKIIFT NVGNPHALGQ KPLTFPRQVV ALCQAPFLLD DPNVGMIFPA DAIARAKHYL SLTSGGLGAY
101: SDSRGLPGVR KEVAEFIQRR DGYPSDPELI FLTDGASKGV MQILNCVIRG ERDGILVPVP QYPLYSATIS LLGGSLVPYY LDESENWGLD VNNLRQSVAQ
201: ARSQGISVRA MVIINPGNPT GQCLSEANLR EILRFCHSEK LVLLGDEVYQ QNIYQDERPF ISSKKVLMDM GSPFSKEVQL VSFHTVSKGY WGECGQRGGY
301: FEMTNFPPRV VEEIYKVASI ALSPNVSAQI FMGLMVSPPK PGDISYDQFA RESKGILESL RRRAKIMTDG FNSCKNVVCN FTEGAMYSFP QIKLPPGALQ
401: AAKQAGKVPD VFYCLKLLEA TGISTVPGSG FGQKEGVFHL RTTILPAEEE MPEIMDSFKK FNDEFMTQYE NSFGYSRM

Best Arabidopsis Sequence Match ( AT1G23310.1 )
(BLAST)

001: MALKALDYDT LNENVKKCQY AVRGELYLRA SELQKEGKKI IFTNVGNPHA LGQKPLTFPR QVVALCQAPF LLDDPNVGML FPADAIARAK HYLSLTSGGL
101: GAYSDSRGLP GVRKEVAEFI QRRDGYPSDP ELIFLTDGAS KGVMQILNCV IRGNGDGILV PVPQYPLYSA TISLLGGTLV PYYLDESENW GLDVANLRQS
201: VAQARSQGIT VRAMVIINPG NPTGQCLSEA NIREILKFCY NEKLVLLGDE VYQQNIYQDE RPFISSKKVL MEMGSPFSKE VQLVSFHTVS KGYWGECGQR
301: GGYFEMTNLP PRVVEEIYKV ASIALSPNVS AQIFMGLMVN PPKPGDISYD QFARESKGIL ESLRRRARLM TDGFNSCKNV VCNFTEGAMY SFPQIRLPTG
401: ALQAAKQAGK VPDVFYCLKL LEATGISTVP GSGFGQKEGV FHLRTTILPA EDEMPEIMDS FKKFNDEFMT QYDNNFGYSK M

Arabidopsis Description

GGAT1Glutamate--glyoxylate aminotransferase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LR30]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.