Factsheet for Bra035236.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra007611.1-P
Bra010441.1-P
Bra013945.1-P
Bra019121.1-P
Bra030199.1-P
Bra035236.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G11280.1	Bra030199.1-P	AT2G22810.1	14983000
AT4G11280.1	Bra007611.1-P	AT3G61510.1	14983000
AT4G11280.1	Bra035236.1-P	AT4G11280.1	14983000
AT4G11280.1	Bra010441.1-P	AT4G26080.1	19705149
AT4G11280.1	Bra013945.1-P	AT4G26080.1	19705149
AT4G11280.1	Bra019121.1-P	AT4G26080.1	19705149

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX86796	Canola	cytosol	100.0	100.0
AT4G11280.1	Thale cress	cytosol	91.39	90.1
KRH41241	Soybean	cytosol	65.16	65.7
VIT_02s0025g00360.t01	Wine grape	cytosol	64.55	65.49
KRH59970	Soybean	cytosol	64.34	64.88
PGSC0003DMT400032096	Potato	cytosol	63.93	64.46
KRH27892	Soybean	cytosol	62.91	63.96
Solyc08g081540.2.1	Tomato	cytosol	63.11	63.77
PGSC0003DMT400031769	Potato	cytosol	63.32	63.71
PGSC0003DMT400014932	Potato	cytosol	63.32	63.58
Solyc08g081550.2.1	Tomato	cytosol	61.07	63.14
TraesCS2A01G396400.1	Wheat	cytosol	61.68	61.93
TraesCS2D01G394200.1	Wheat	cytosol	61.48	61.73
TraesCS2B01G414800.1	Wheat	cytosol	61.48	61.73
GSMUA_Achr4P24930_001	Banana	cytosol	60.66	61.54
Bra007611.1-P	Field mustard	cytosol	58.81	60.68
Zm00001d002592_P002	Maize	cytosol	60.25	60.62
EES12700	Sorghum	cytosol	60.45	60.08
GSMUA_Achr4P29150_001	Banana	cytosol	59.43	59.67
GSMUA_AchrUn_...	Banana	cytosol	53.89	59.37
Os04t0578000-01	Rice	cytosol	58.4	59.01
Bra033261.1-P	Field mustard	cytosol	60.04	58.72
Solyc12g056180.1.1	Tomato	cytosol	56.56	58.35
PGSC0003DMT400012864	Potato	cytosol	57.79	58.14
Zm00001d026060_P003	Maize	cytosol	59.63	57.06
Solyc08g008100.2.1	Tomato	nucleus	42.21	56.44
Bra019117.1-P	Field mustard	cytosol	50.0	54.1
Bra026456.1-P	Field mustard	cytosol	48.98	53.35
Bra010611.1-P	Field mustard	cytosol	50.41	52.45
Bra011784.1-P	Field mustard	cytosol	50.41	52.45
Bra030199.1-P	Field mustard	cytosol	50.2	51.69
Bra000637.1-P	Field mustard	cytosol	48.98	51.51
Bra031846.1-P	Field mustard	cytosol	48.98	50.85
Bra037829.1-P	Field mustard	cytosol	45.7	50.8
Bra017962.1-P	Field mustard	cytosol	48.57	50.43
Bra012924.1-P	Field mustard	cytosol	48.57	50.43
Bra024420.1-P	Field mustard	cytosol	48.16	50.0
HORVU2Hr1G094230.2	Barley	cytosol	49.59	50.0
Bra022560.1-P	Field mustard	mitochondrion, plastid	35.04	34.2
Bra027008.1-P	Field mustard	cytosol	35.25	31.68
Bra016202.1-P	Field mustard	cytosol	19.88	20.12
Bra016353.1-P	Field mustard	cytosol	19.47	19.87
Bra024580.1-P	Field mustard	cytosol	19.26	19.67
Bra012371.1-P	Field mustard	cytosol	18.24	19.52
Bra025984.1-P	Field mustard	cytosol, mitochondrion	19.67	17.88
Bra016607.1-P	Field mustard	mitochondrion	19.26	17.34
Bra026675.1-P	Field mustard	mitochondrion	19.26	17.15
Bra009959.1-P	Field mustard	cytosol, peroxisome, plasma membrane	9.43	13.37

Protein Annotations

MapMan:11.5.1.1	Gene3D:3.40.640.10	Gene3D:3.90.1150.10	InterPro:Aminotransferase_I/II	EnsemblPlantsGene:Bra035236	EnsemblPlants:Bra035236.1
EnsemblPlants:Bra035236.1-P	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0006950
GO:GO:0006979	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009605	GO:GO:0009611
GO:GO:0009612	GO:GO:0009628	GO:GO:0009719	GO:GO:0009733	GO:GO:0009753	GO:GO:0009987
GO:GO:0010087	GO:GO:0016847	GO:GO:0030170	GO:GO:0042218	GO:GO:0042802	GO:GO:0051301
GO:GO:0071281	InterPro:IPR015421	InterPro:IPR015422	UniProt:M4F2D8	InterPro:NHTrfase_class1_PyrdxlP-BS	PFAM:PF00155
PRINTS:PR00753	ScanProsite:PS00105	PANTHER:PTHR43795	PANTHER:PTHR43795:SF6	InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_dom1
InterPro:PyrdxlP-dep_Trfase_major	SUPFAM:SSF53383	UniParc:UPI0002546B13	SEG:seg	:	:

Description

AT4G11280 (E=2e-253) ACS6 | ACS6 (1-AMINOCYCLOPROPANE-1-CARBOXYLIC ACID (ACC) SYNTHASE 6); 1-aminocyclopropane-1-carboxylate synthase

Coordinates

chrA08:-:9417602..9419344

Molecular Weight (calculated)

54789.8 Da

IEP (calculated)

6.825

GRAVY (calculated)

-0.240

Length

488 amino acids

Sequence
(BLAST)

001: MVALTAEKQD HNLLSRMAAG DGHGENSAYF DGWKAYEENP FHPIDRPDGV IQMGLAENQL CGDLMRKWVL EHPEASICTA EGVNQFSDIA IFQDYHGLPE
101: FRQAVAKFME KTRNNKVKFD PDRIVMSGGA TGAHETVAFC LANPGDGFLV PTPYYPGFDR DLRWRTGVNL VPVTCHSSNG FKITVEALDA AYENARVPVK
201: GLLITNPSNP LGTTLDRDCL KSLVKFTNDK GIHLIADEIY AATTFGESEF ISVAEVIEEI PDCNRDLIHI VYSLSKDMGL PGLRIGIIYS YNNRVVQIAR
301: KMSSFGLVSS QTQHLIAKML SDKDFVDEFI RKSKLRLAER HAELTTGLDG LGIGWLKAGA GLFIWMDLRN LLKTATFDSE MELWRVIVHK VKLNVSPGGS
401: CHCHEPGWFR VCFANMDHQT METALERIRV FTSQIEEESL KLTKQMAKKK KCWQSSLRLS FKDTRRFEEG FFSPHSPVPP SPLVRAQI

Best Arabidopsis Sequence Match ( AT4G11280.1 )
(BLAST)

001: MVAFATEKKQ DLNLLSKIAS GDGHGENSSY FDGWKAYEEN PFHPIDRPDG VIQMGLAENQ LCGDLMRKWV LKHPEASICT SEGVNQFSDI AIFQDYHGLP
101: EFRQAVAKFM EKTRNNKVKF DPDRIVMSGG ATGAHETVAF CLANPGDGFL VPTPYYPGFD RDLRWRTGVN LVPVTCHSSN GFKITVEALE AAYENARKSN
201: IPVKGLLVTN PSNPLGTTLD RECLKSLVNF TNDKGIHLIA DEIYAATTFG QSEFISVAEV IEEIEDCNRD LIHIVYSLSK DMGLPGLRVG IVYSYNDRVV
301: QIARKMSSFG LVSSQTQHLI AKMLSDEEFV DEFIRESKLR LAARHAEITT GLDGLGIGWL KAKAGLFLWM DLRNLLKTAT FDSETELWRV IVHQVKLNVS
401: PGGSFHCHEP GWFRVCFANM DHKTMETALE RIRVFTSQLE EETKPMAATT MMAKKKKKCW QSNLRLSFSD TRRFDDGFFS PHSPVPPSPL VRAQT

Arabidopsis Description

ACS61-aminocyclopropane-1-carboxylate synthase 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9SAR0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.