Factsheet for Solyc12g056180.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	plastid
EpiLoc:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g095080.2.1
Solyc02g063540.1.1
Solyc02g091990.2.1
Solyc03g043890.2.1
Solyc05g050010.2.1
Solyc07g040990.2.1
Solyc08g008100.2.1
Solyc08g081540.2.1
Solyc08g081550.2.1
Solyc12g056180.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G11280.1	Solyc02g063540.1.1	AT2G22810.1	14983000
AT4G11280.1	Solyc02g091990.2.1	AT2G22810.1	14983000
AT4G11280.1	Solyc03g043890.2.1	AT2G22810.1	14983000
AT4G11280.1	Solyc01g095080.2.1	AT3G61510.1	14983000
AT4G11280.1	Solyc05g050010.2.1	AT3G61510.1	14983000
AT4G11280.1	Solyc08g008100.2.1	AT4G11280.1	14983000
AT4G11280.1	Solyc08g081540.2.1	AT4G11280.1	14983000
AT4G11280.1	Solyc08g081550.2.1	AT4G11280.1	14983000
AT4G11280.1	Solyc12g056180.1.1	AT4G11280.1	14983000
AT4G11280.1	Solyc07g040990.2.1	AT4G26080.1	19705149

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400012864	Potato	cytosol	94.29	91.96
Solyc08g008110.2.1	Tomato	cytosol, nucleus	16.49	77.23
Solyc08g081540.2.1	Tomato	cytosol	71.25	69.77
Solyc08g081550.2.1	Tomato	cytosol	68.5	68.64
VIT_02s0025g00360.t01	Wine grape	cytosol	64.48	63.41
KRH27892	Soybean	cytosol	62.79	61.88
Solyc01g095080.2.1	Tomato	cytosol	63.0	61.44
Solyc08g008100.2.1	Tomato	nucleus	47.15	61.1
Solyc05g050010.2.1	Tomato	cytosol	61.31	60.92
GSMUA_AchrUn_...	Banana	cytosol	56.66	60.5
KRH59970	Soybean	cytosol	61.73	60.33
KRH41241	Soybean	cytosol	61.1	59.71
GSMUA_Achr4P29150_001	Banana	cytosol	60.25	58.64
GSMUA_Achr4P24930_001	Banana	cytosol	58.77	57.8
AT4G11280.1	Thale cress	cytosol	59.83	57.17
CDY13251	Canola	cytosol	58.99	56.82
Bra035236.1-P	Field mustard	cytosol	58.35	56.56
CDX86796	Canola	cytosol	58.35	56.56
TraesCS2A01G396400.1	Wheat	cytosol	56.03	54.53
TraesCS2D01G394200.1	Wheat	cytosol	55.81	54.32
TraesCS2B01G414800.1	Wheat	cytosol	55.81	54.32
Os04t0578000-01	Rice	cytosol	55.39	54.24
EES12700	Sorghum	cytosol	55.81	53.77
Solyc12g008740.1.1	Tomato	cytosol	49.26	53.69
Zm00001d002592_P002	Maize	cytosol	54.97	53.61
Solyc02g063540.1.1	Tomato	cytosol	31.92	53.17
Solyc07g026900.1.1	Tomato	cytosol	49.47	53.06
Zm00001d026060_P003	Maize	cytosol	54.76	50.78
Solyc02g091990.2.1	Tomato	cytosol	49.68	50.11
Solyc03g043890.2.1	Tomato	cytosol	49.68	49.89
Solyc04g077410.2.1	Tomato	cytosol	48.41	48.62
HORVU2Hr1G094230.2	Barley	cytosol	44.4	43.39
Solyc03g007070.2.1	Tomato	cytosol	37.84	33.46
Solyc08g079750.2.1	Tomato	plastid	37.84	32.66
Solyc05g013380.2.1	Tomato	extracellular, nucleus, plastid	19.66	19.33
Solyc01g007940.2.1	Tomato	cytosol	18.82	18.82
Solyc03g123600.2.1	Tomato	cytosol	17.76	17.36
Solyc06g063090.2.1	Tomato	extracellular	19.03	16.61
Solyc03g123610.2.1	Tomato	plastid	18.39	14.36

Protein Annotations

MapMan:11.5.1.1	Gene3D:3.40.640.10	Gene3D:3.90.1150.10	InterPro:Aminotransferase_I/II	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0030170	InterPro:IPR015421
InterPro:IPR015422	UniProt:K4DFU9	InterPro:NHTrfase_class1_PyrdxlP-BS	PFAM:PF00155	PRINTS:PR00753	ScanProsite:PS00105
PANTHER:PTHR43795	PANTHER:PTHR43795:SF6	InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_dom1	InterPro:PyrdxlP-dep_Trfase_major	SUPFAM:SSF53383
EnsemblPlantsGene:Solyc12g056180.1	EnsemblPlants:Solyc12g056180.1.1	UniParc:UPI0002769EA0	SEG:seg	:	:

Description

No Description!

Coordinates

chr12:+:62145270..62149204

Molecular Weight (calculated)

53547.4 Da

IEP (calculated)

5.244

GRAVY (calculated)

-0.108

Length

473 amino acids

Sequence
(BLAST)

001: MGFISNINNI ELLSKVATNN GHGENSAYFD GWKAYEIDPF HPTKNPNGVI QMGLAENQLC FDLIQEWVVN NQKSSICTAG GCEEFKEIAI YQDYHGLPEF
101: RRGVASFMSK VRGDKIKFDE ERIVMSGGAT GAHELLAFCL ADPGEAFLVP TPYYPGFDRD LSWRTGVQLF PIICESCNNF KVTKKALEDA YNKAQQSNIT
201: IKGLLLNNPS NPLGTILDME ALKDTIRFIN DKNIHLICDE IYAATVFNVP KFISISEIII SEDVQCNLDL IHIVYSLSKD LGFPGFRVGI IYSYNDVVTK
301: CARKMSSFGL VSTQTQYLIS NMLLDDTFIE KFVVESRERL EKRHGVFTKG LENIGINTLE SNAGLFCWMD LRSLLEKNTF ESEIKLWRMI INDVKLNVSP
401: GCSFHCCEPG WFRVCFANMD DDTMRIALRR IEIFVVQYKG INNIIEEGIG ESLPITPGPV SLRSIYEKID RRR

Best Arabidopsis Sequence Match ( AT4G11280.1 )
(BLAST)

001: MVAFATEKKQ DLNLLSKIAS GDGHGENSSY FDGWKAYEEN PFHPIDRPDG VIQMGLAENQ LCGDLMRKWV LKHPEASICT SEGVNQFSDI AIFQDYHGLP
101: EFRQAVAKFM EKTRNNKVKF DPDRIVMSGG ATGAHETVAF CLANPGDGFL VPTPYYPGFD RDLRWRTGVN LVPVTCHSSN GFKITVEALE AAYENARKSN
201: IPVKGLLVTN PSNPLGTTLD RECLKSLVNF TNDKGIHLIA DEIYAATTFG QSEFISVAEV IEEIEDCNRD LIHIVYSLSK DMGLPGLRVG IVYSYNDRVV
301: QIARKMSSFG LVSSQTQHLI AKMLSDEEFV DEFIRESKLR LAARHAEITT GLDGLGIGWL KAKAGLFLWM DLRNLLKTAT FDSETELWRV IVHQVKLNVS
401: PGGSFHCHEP GWFRVCFANM DHKTMETALE RIRVFTSQLE EETKPMAATT MMAKKKKKCW QSNLRLSFSD TRRFDDGFFS PHSPVPPSPL VRAQT

Arabidopsis Description

ACS61-aminocyclopropane-1-carboxylate synthase 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9SAR0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.