Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 1
- cytosol 4
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc06g073150.2.1 | |
| Solyc11g017300.1.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G08040.1 | Solyc06g073150.2.1 | AT1G71230.1 | 21798944 |
| AT4G08040.1 | Solyc11g017300.1.1 | AT1G71230.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400012600 | Potato | cytosol | 94.69 | 95.5 |
| Solyc02g063540.1.1 | Tomato | cytosol | 43.52 | 72.18 |
| VIT_18s0001g08520.t01 | Wine grape | nucleus | 66.88 | 67.45 |
| Solyc02g091990.2.1 | Tomato | cytosol | 66.88 | 67.16 |
| Solyc03g043890.2.1 | Tomato | cytosol | 65.61 | 65.61 |
| KRH61460 | Soybean | cytosol | 48.62 | 65.43 |
| KRH52156 | Soybean | cytosol | 63.06 | 63.6 |
| AT4G08040.1 | Thale cress | cytosol | 62.0 | 63.48 |
| CDY34015 | Canola | cytosol | 61.78 | 62.72 |
| Bra000637.1-P | Field mustard | cytosol | 61.57 | 62.5 |
| CDX83146 | Canola | cytosol | 61.57 | 62.5 |
| Solyc12g008740.1.1 | Tomato | cytosol | 50.32 | 54.61 |
| Solyc07g026900.1.1 | Tomato | cytosol | 50.96 | 54.42 |
| Solyc12g056180.1.1 | Tomato | cytosol | 48.62 | 48.41 |
| Solyc05g050010.2.1 | Tomato | cytosol | 48.83 | 48.32 |
| Solyc01g095080.2.1 | Tomato | cytosol | 49.68 | 48.25 |
| Solyc08g008110.2.1 | Tomato | cytosol, nucleus | 10.19 | 47.52 |
| Solyc08g081540.2.1 | Tomato | cytosol | 48.62 | 47.41 |
| Solyc08g081550.2.1 | Tomato | cytosol | 46.71 | 46.61 |
| Solyc08g008100.2.1 | Tomato | nucleus | 33.55 | 43.29 |
| Solyc03g007070.2.1 | Tomato | cytosol | 38.64 | 34.02 |
| Solyc08g079750.2.1 | Tomato | plastid | 39.07 | 33.58 |
| Solyc01g007940.2.1 | Tomato | cytosol | 18.26 | 18.18 |
| Solyc05g013380.2.1 | Tomato | extracellular, nucleus, plastid | 18.47 | 18.09 |
| Solyc03g123600.2.1 | Tomato | cytosol | 17.2 | 16.74 |
| Solyc06g063090.2.1 | Tomato | extracellular | 18.9 | 16.42 |
| Solyc03g123610.2.1 | Tomato | plastid | 17.41 | 13.53 |
Protein Annotations
| MapMan:11.5.1.1 | Gene3D:3.40.640.10 | Gene3D:3.90.1150.10 | ProteinID:AAQ17608.1 | InterPro:Aminotransferase_I/II | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0005488 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0016829 | GO:GO:0016847 | GO:GO:0030170 | GO:GO:0042218 | InterPro:IPR015421 | InterPro:IPR015422 |
| InterPro:NHTrfase_class1_PyrdxlP-BS | PFAM:PF00155 | PRINTS:PR00753 | ScanProsite:PS00105 | PANTHER:PTHR43795 | PANTHER:PTHR43795:SF10 |
| InterPro:PyrdxlP-dep_Trfase | InterPro:PyrdxlP-dep_Trfase_dom1 | InterPro:PyrdxlP-dep_Trfase_major | UniProt:Q4LDM2 | SUPFAM:SSF53383 | EnsemblPlantsGene:Solyc04g077410.2 |
| EnsemblPlants:Solyc04g077410.2.1 | UniParc:UPI000054B4C4 | : | : | : | : |
Description
1-aminocyclopropane-1-carboxylate synthase [Source:UniProtKB/TrEMBL;Acc:Q4LDM2]
Coordinates
chr4:-:62314473..62317036
Molecular Weight (calculated)
53489.5 Da
IEP (calculated)
9.268
GRAVY (calculated)
-0.279
Length
471 amino acids
Sequence
(BLAST)
(BLAST)
001: MLKMLSKMAM CKSHGQDSSY FIGWQEYEKN PYDPLQNPSG IIQMGLAENQ LSFDLIESWL TRNQDVIQFR ENGGSMFRDL ALFQDYHGLQ AFKNVLVSFM
101: AEIRRKKVKF DPKNLVLTAG STSANETLIF CLAEPGEALL IPTPYYPGFD RDLKWRTGAE IVPIQCYSSN NFRITESALE EAYEQAQKRN LTVKGVFITN
201: PSNPLGTTMS RNELNILITF AMTKNIHIVS DEIYAGTVFD SPKFVSIIEA LIDRKLEKSK MWNQVHIVSS LSKDLGLPGF RVGMIYSNNE TLIAAATKMS
301: SFGLISSQTQ YLLSKILGDR RFIKRYVKQN KKQLIHRREM LASGLANSGI ECLDSNAGLF CFVDMRDLLN SNTFEAEMEL WKKIISNVGL NVSPGSSCHC
401: SEPGWFRVCF ANMSKETLDL AMQRINNFVN SDRDIHRQQP LRFVTGAGSR RRRTIANWVV KFSSGDGRRD R
101: AEIRRKKVKF DPKNLVLTAG STSANETLIF CLAEPGEALL IPTPYYPGFD RDLKWRTGAE IVPIQCYSSN NFRITESALE EAYEQAQKRN LTVKGVFITN
201: PSNPLGTTMS RNELNILITF AMTKNIHIVS DEIYAGTVFD SPKFVSIIEA LIDRKLEKSK MWNQVHIVSS LSKDLGLPGF RVGMIYSNNE TLIAAATKMS
301: SFGLISSQTQ YLLSKILGDR RFIKRYVKQN KKQLIHRREM LASGLANSGI ECLDSNAGLF CFVDMRDLLN SNTFEAEMEL WKKIISNVGL NVSPGSSCHC
401: SEPGWFRVCF ANMSKETLDL AMQRINNFVN SDRDIHRQQP LRFVTGAGSR RRRTIANWVV KFSSGDGRRD R
001: MGLLSKKASC NTHGQDSSYF WGWEEYEKNP YDEIKNPDGI IQMGLAENQL SFDLIESWLA KNPDAANFQR EGQSIFRELA LFQDYHGLPS FKNAMADFMS
101: ENRGNRVSFN PNKLVLTAGA TPANETLMFC LADPGDAFLL PTPYYPGFDR DLKWRTGAEI VPIQCKSANG FRITKVALEE AYEQAQKLNL KVKGVLITNP
201: SNPLGTTTTR TELNHLLDFI SRKKIHLISD EIYSGTVFTN PGFISVMEVL KDRKLENTDV FDRVHIVYSL SKDLGLPGFR VGVIYSNDDF VVSAATKMSS
301: FGLISSQTQY LLSALLSDKT FTKNYLEENQ IRLKNRHKKL VSGLEAAGIE CLKSNAGLFC WVDMRHLLKS NTFEAEIELW KKIVYEVKLN ISPGSSCHCN
401: EPGWFRVCFA NLSEETLKVA LDRLKRFVDG PSPTRRSQSE HQRLKNLRKM KVSNWVFRLS FHDREPEER
101: ENRGNRVSFN PNKLVLTAGA TPANETLMFC LADPGDAFLL PTPYYPGFDR DLKWRTGAEI VPIQCKSANG FRITKVALEE AYEQAQKLNL KVKGVLITNP
201: SNPLGTTTTR TELNHLLDFI SRKKIHLISD EIYSGTVFTN PGFISVMEVL KDRKLENTDV FDRVHIVYSL SKDLGLPGFR VGVIYSNDDF VVSAATKMSS
301: FGLISSQTQY LLSALLSDKT FTKNYLEENQ IRLKNRHKKL VSGLEAAGIE CLKSNAGLFC WVDMRHLLKS NTFEAEIELW KKIVYEVKLN ISPGSSCHCN
401: EPGWFRVCFA NLSEETLKVA LDRLKRFVDG PSPTRRSQSE HQRLKNLRKM KVSNWVFRLS FHDREPEER
Arabidopsis Description
ACS81-aminocyclopropane-1-carboxylate synthase-like protein [Source:UniProtKB/TrEMBL;Acc:Q56Y32]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.