Factsheet for Solyc03g043890.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g063540.1.1
Solyc02g091990.2.1
Solyc03g043890.2.1
Solyc07g026900.1.1
Solyc08g008100.2.1
Solyc08g081540.2.1
Solyc08g081550.2.1
Solyc09g055310.2.1
Solyc09g065640.2.1
Solyc12g008740.1.1
Solyc12g056180.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G22810.1	Solyc02g063540.1.1	AT2G22810.1	14983000
AT2G22810.1	Solyc02g091990.2.1	AT2G22810.1	14983000
AT2G22810.1	Solyc03g043890.2.1	AT2G22810.1	14983000
AT2G22810.1	Solyc08g008100.2.1	AT4G11280.1	14983000
AT2G22810.1	Solyc08g081540.2.1	AT4G11280.1	14983000
AT2G22810.1	Solyc08g081550.2.1	AT4G11280.1	14983000
AT2G22810.1	Solyc12g056180.1.1	AT4G11280.1	14983000
AT2G22810.1	Solyc07g026900.1.1	AT4G26200.1	14983000
AT2G22810.1	Solyc12g008740.1.1	AT4G26200.1	14983000
AT2G22810.1	Solyc02g063540.1.1	AT4G37770.1	14983000
AT2G22810.1	Solyc02g091990.2.1	AT4G37770.1	14983000
AT2G22810.1	Solyc03g043890.2.1	AT4G37770.1	14983000
AT4G37770.1	Solyc02g063540.1.1	AT2G22810.1	14983000
AT4G37770.1	Solyc02g091990.2.1	AT2G22810.1	14983000
AT4G37770.1	Solyc03g043890.2.1	AT2G22810.1	14983000
AT4G37770.1	Solyc02g063540.1.1	AT4G37770.1	14983000
AT4G37770.1	Solyc02g091990.2.1	AT4G37770.1	14983000
AT4G37770.1	Solyc03g043890.2.1	AT4G37770.1	14983000
AT5G65800.1	Solyc09g065640.2.1	AT4G02680.1	15118728
AT5G65800.1	Solyc09g055310.2.1	AT5G58550.1	15118728

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400013977	Potato	cytosol	76.86	97.05
Solyc02g063540.1.1	Tomato	cytosol	52.44	86.97
Solyc02g091990.2.1	Tomato	cytosol	83.44	83.8
VIT_00s1437g00010.t01	Wine grape	cytosol	78.34	78.68
VIT_00s0840g00010.t01	Wine grape	cytosol	78.34	78.68
CDY66472	Canola	cytosol	66.88	78.16
CDX75675	Canola	cytosol	73.04	76.27
AT4G37770.1	Thale cress	cytosol	74.1	74.41
Bra011784.1-P	Field mustard	cytosol	73.67	73.99
CDX69326	Canola	cytosol	73.67	73.99
KRH77167	Soybean	cytosol	73.46	73.62
Bra010611.1-P	Field mustard	cytosol	73.25	73.56
KRH28319	Soybean	cytosol	73.46	73.46
CDY69462	Canola	cytosol	73.04	73.35
KRH04373	Soybean	cytosol	73.46	72.84
GSMUA_Achr3P25830_001	Banana	mitochondrion	69.0	72.38
AT3G49700.1	Thale cress	cytosol	72.19	72.34
KRH58165	Soybean	cytosol	73.67	72.29
CDY23035	Canola	cytosol	71.34	72.1
AT5G65800.1	Thale cress	cytosol	71.76	71.91
GSMUA_Achr1P14280_001	Banana	nucleus	69.64	71.77
CDX81296	Canola	cytosol	66.88	71.75
Bra031846.1-P	Field mustard	cytosol	71.55	71.7
CDY18674	Canola	cytosol	66.67	71.53
GSMUA_Achr2P08600_001	Banana	cytosol	70.28	71.49
CDY08163	Canola	cytosol	71.34	71.49
CDY02111	Canola	cytosol	71.34	71.49
Bra012924.1-P	Field mustard	cytosol	71.34	71.49
Bra017962.1-P	Field mustard	cytosol	71.34	71.49
Bra030199.1-P	Field mustard	cytosol	71.76	71.31
Bra037829.1-P	Field mustard	cytosol	66.24	71.07
Bra024420.1-P	Field mustard	cytosol	70.91	71.06
CDY05953	Canola	cytosol	70.91	71.06
CDY25639	Canola	cytosol	71.34	70.89
CDX89520	Canola	cytosol	70.7	70.25
AT2G22810.1	Thale cress	cytosol	70.49	70.04
GSMUA_Achr5P08880_001	Banana	cytosol	69.21	69.96
GSMUA_Achr4P01340_001	Banana	mitochondrion	66.88	68.18
GSMUA_Achr1P04420_001	Banana	cytosol	66.45	67.75
Solyc04g077410.2.1	Tomato	cytosol	65.61	65.61
Os03t0727600-01	Rice	cytosol	65.61	63.45
TraesCS4B01G058200.1	Wheat	cytosol	65.18	63.3
Zm00001d033862_P001	Maize	cytosol	64.54	62.68
TraesCS4D01G058200.1	Wheat	cytosol	64.33	62.47
TraesCS4A01G256500.1	Wheat	cytosol	64.33	62.47
EER90948	Sorghum	cytosol	64.12	60.76
Solyc12g008740.1.1	Tomato	cytosol	52.23	56.68
Solyc07g026900.1.1	Tomato	cytosol	52.44	56.01
HORVU4Hr1G009800.5	Barley	cytosol, plastid	64.12	52.89
Solyc12g056180.1.1	Tomato	cytosol	49.89	49.68
Solyc01g095080.2.1	Tomato	cytosol	50.32	48.87
Solyc05g050010.2.1	Tomato	cytosol	48.83	48.32
Solyc08g081540.2.1	Tomato	cytosol	49.47	48.24
Solyc08g008110.2.1	Tomato	cytosol, nucleus	10.19	47.52
Solyc08g081550.2.1	Tomato	cytosol	47.56	47.46
Solyc08g008100.2.1	Tomato	nucleus	32.91	42.47
Solyc03g007070.2.1	Tomato	cytosol	39.49	34.77
Solyc08g079750.2.1	Tomato	plastid	40.13	34.49
Solyc03g123600.2.1	Tomato	cytosol	19.75	19.21
Solyc06g063090.2.1	Tomato	extracellular	22.08	19.19
Solyc05g013380.2.1	Tomato	extracellular, nucleus, plastid	19.32	18.92
Solyc01g007940.2.1	Tomato	cytosol	18.68	18.6
Solyc03g123610.2.1	Tomato	plastid	20.17	15.68

Protein Annotations

MapMan:11.5.1.1	Gene3D:3.40.640.10	Gene3D:3.90.1150.10	ProteinID:AAQ13597.1	InterPro:Aminotransferase_I/II	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016829	GO:GO:0016847	GO:GO:0030170	GO:GO:0042218	InterPro:IPR015421	InterPro:IPR015422
InterPro:NHTrfase_class1_PyrdxlP-BS	PFAM:PF00155	PRINTS:PR00753	ScanProsite:PS00105	PANTHER:PTHR43795	PANTHER:PTHR43795:SF10
InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_dom1	InterPro:PyrdxlP-dep_Trfase_major	UniProt:Q4LDM0	SUPFAM:SSF53383	EnsemblPlantsGene:Solyc03g043890.2
EnsemblPlants:Solyc03g043890.2.1	UniParc:UPI0000551CC8	SEG:seg	:	:	:

Description

1-aminocyclopropane-1-carboxylate synthase [Source:UniProtKB/TrEMBL;Acc:Q4LDM0]

Coordinates

chr3:+:7572274..7574653

Molecular Weight (calculated)

53110.5 Da

IEP (calculated)

7.738

GRAVY (calculated)

-0.256

Length

471 amino acids

Sequence
(BLAST)

001: MKLLSDMASC NSHGQDSSYF LGWQEYEKNP YDEIQNPKGI IQMGLAENQL SFDLLESWLA QNPDAAGFKR NGESIFRELA LFQDYHGLPD FKNALVQFMS
101: EIRGNKVTFN PNKLVLTAGA TSANETLMFC LANPGDAFLL PTPYYPGFDR DLKWRTGAEI VPIQCTSSNG FRITQSALEE SYKLAKTRNL RVKGILVTNP
201: SNPLGTTLTR NELELLVSFV AEKGIHLISD EIYSGTVFNS PKFVSVMEVL IENNYMYTEV WDRVHIVYSL SKDLGLPGFR IGAIYSNDAV IVSAATKMSS
301: FGLISSQTQY LLSAMLTDKK FTKKYISENQ KRLKKRHAML VKGLESSGIS CLESNAGLFC WVDMRHLLKT NTFEAEIELW KKIVYEVRLN ISPGSSCHCT
401: EPGWFRACFA NMSEDTLNLA IQRIKSFVDS SDVIGINVDQ SNQTNQNTST SPKKKLFAKW GFRLSFNDRE R

Best Arabidopsis Sequence Match ( AT4G37770.1 )
(BLAST)

001: MGLLSKKASC NTHGQDSSYF WGWEEYEKNP YDEIKNPDGI IQMGLAENQL SFDLIESWLA KNPDAANFQR EGQSIFRELA LFQDYHGLPS FKNAMADFMS
101: ENRGNRVSFN PNKLVLTAGA TPANETLMFC LADPGDAFLL PTPYYPGFDR DLKWRTGAEI VPIQCKSANG FRITKVALEE AYEQAQKLNL KVKGVLITNP
201: SNPLGTTTTR TELNHLLDFI SRKKIHLISD EIYSGTVFTN PGFISVMEVL KDRKLENTDV FDRVHIVYSL SKDLGLPGFR VGVIYSNDDF VVSAATKMSS
301: FGLISSQTQY LLSALLSDKT FTKNYLEENQ IRLKNRHKKL VSGLEAAGIE CLKSNAGLFC WVDMRHLLKS NTFEAEIELW KKIVYEVKLN ISPGSSCHCN
401: EPGWFRVCFA NLSEETLKVA LDRLKRFVDG PSPTRRSQSE HQRLKNLRKM KVSNWVFRLS FHDREPEER

Arabidopsis Description

ACS81-aminocyclopropane-1-carboxylate synthase-like protein [Source:UniProtKB/TrEMBL;Acc:Q56Y32]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.