Factsheet for VIT_00s0840g00010.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_00s0179g00100.t01
VIT_00s0840g00010.t01
VIT_00s1437g00010.t01
VIT_02s0025g00360.t01
VIT_06s0004g07020.t01
VIT_11s0016g02560.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G22810.1	VIT_00s0840g00010.t01	AT2G22810.1	14983000
AT2G22810.1	VIT_00s1437g00010.t01	AT2G22810.1	14983000
AT2G22810.1	VIT_02s0025g00360.t01	AT4G11280.1	14983000
AT2G22810.1	VIT_11s0016g02560.t01	AT4G26200.1	14983000
AT2G22810.1	VIT_00s0840g00010.t01	AT4G37770.1	14983000
AT2G22810.1	VIT_00s1437g00010.t01	AT4G37770.1	14983000
AT4G37770.1	VIT_00s0840g00010.t01	AT2G22810.1	14983000
AT4G37770.1	VIT_00s1437g00010.t01	AT2G22810.1	14983000
AT4G37770.1	VIT_00s0840g00010.t01	AT4G37770.1	14983000
AT4G37770.1	VIT_00s1437g00010.t01	AT4G37770.1	14983000
AT5G65800.1	VIT_00s0179g00100.t01	AT4G02680.1	15118728
AT5G65800.1	VIT_06s0004g07020.t01	AT5G58550.1	15118728

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_00s1437g00010.t01	Wine grape	cytosol	99.79	99.79
PGSC0003DMT400055203	Potato	cytosol	81.88	81.88
Solyc02g091990.2.1	Tomato	cytosol	81.24	81.24
Solyc02g063540.1.1	Tomato	cytosol	49.04	80.99
PGSC0003DMT400008587	Potato	cytosol	79.53	80.91
PGSC0003DMT400008605	Potato	cytosol	72.92	80.85
CDY66472	Canola	cytosol	68.87	80.15
Solyc03g043890.2.1	Tomato	cytosol	78.68	78.34
CDX75675	Canola	cytosol	74.84	77.83
AT4G37770.1	Thale cress	cytosol	76.76	76.76
PGSC0003DMT400013977	Potato	cytosol	60.98	76.68
KRH77167	Soybean	cytosol	76.76	76.6
Bra010611.1-P	Field mustard	cytosol	76.55	76.55
CDX69326	Canola	cytosol	76.55	76.55
KRH28319	Soybean	cytosol	76.76	76.43
AT3G49700.1	Thale cress	cytosol	76.55	76.38
Bra011784.1-P	Field mustard	cytosol	76.33	76.33
CDY69462	Canola	cytosol	76.33	76.33
Bra030199.1-P	Field mustard	cytosol	76.76	75.95
KRH04373	Soybean	cytosol	76.76	75.79
CDY23035	Canola	cytosol	74.84	75.32
CDY25639	Canola	cytosol	76.12	75.32
CDY02111	Canola	cytosol	75.27	75.11
Bra012924.1-P	Field mustard	cytosol	75.27	75.11
CDX89520	Canola	cytosol	75.91	75.11
Bra017962.1-P	Field mustard	cytosol	75.05	74.89
KRH58165	Soybean	cytosol	76.55	74.79
CDX81296	Canola	cytosol	69.94	74.72
CDY18674	Canola	cytosol	69.72	74.49
AT5G65800.1	Thale cress	cytosol	74.63	74.47
CDY08163	Canola	cytosol	74.41	74.26
Bra031846.1-P	Field mustard	cytosol	74.41	74.26
VIT_18s0001g08520.t01	Wine grape	nucleus	73.77	74.09
CDY05953	Canola	cytosol	74.2	74.04
Bra037829.1-P	Field mustard	cytosol	69.3	74.03
Bra024420.1-P	Field mustard	cytosol	73.77	73.62
AT2G22810.1	Thale cress	cytosol	74.2	73.42
GSMUA_Achr1P14280_001	Banana	nucleus	71.22	73.09
GSMUA_Achr2P08600_001	Banana	cytosol	72.07	73.0
GSMUA_Achr3P25830_001	Banana	mitochondrion	69.3	72.38
GSMUA_Achr5P08880_001	Banana	cytosol	70.58	71.03
GSMUA_Achr1P04420_001	Banana	cytosol	68.23	69.26
GSMUA_Achr4P01340_001	Banana	mitochondrion	67.59	68.61
Os03t0727600-01	Rice	cytosol	66.31	63.86
TraesCS4B01G058200.1	Wheat	cytosol	65.25	63.09
TraesCS4A01G256500.1	Wheat	cytosol	65.03	62.89
TraesCS4D01G058200.1	Wheat	cytosol	64.82	62.68
Zm00001d033862_P001	Maize	cytosol	64.61	62.47
EER90948	Sorghum	cytosol	64.39	60.76
VIT_11s0016g02560.t01	Wine grape	cytosol, nucleus, peroxisome	56.72	59.78
VIT_15s0046g02220.t01	Wine grape	cytosol	50.53	54.11
HORVU4Hr1G009800.5	Barley	cytosol, plastid	64.61	53.06
VIT_02s0025g00360.t01	Wine grape	cytosol	52.45	51.14
VIT_02s0234g00090.t01	Wine grape	cytosol	50.53	46.84
VIT_00s1764g00010.t01	Wine grape	cytosol	31.13	41.83
VIT_16s0022g02010.t01	Wine grape	cytosol	41.15	35.87
VIT_00s0225g00130.t01	Wine grape	cytosol	20.26	19.75
VIT_09s0002g00340.t01	Wine grape	mitochondrion	20.04	17.87
VIT_02s0025g04980.t01	Wine grape	cytosol, nucleus	21.54	5.82

Protein Annotations

EntrezGene:100258512	wikigene:100258512	MapMan:11.5.1.1	Gene3D:3.40.640.10	Gene3D:3.90.1150.10	UniProt:A5BL65
EMBL:AM463368	InterPro:Aminotransferase_I/II	ProteinID:CAN74730	ProteinID:CAN74730.1	ProteinID:CCB48458	ProteinID:CCB48458.1
EMBL:FN595312	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016847	GO:GO:0030170	GO:GO:0042218	InterPro:IPR015421
InterPro:IPR015422	EntrezGene:LOC100258512	wikigene:LOC100258512	InterPro:NHTrfase_class1_PyrdxlP-BS	PFAM:PF00155	PRINTS:PR00753
ScanProsite:PS00105	PANTHER:PTHR43795	PANTHER:PTHR43795:SF10	InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_dom1	InterPro:PyrdxlP-dep_Trfase_major
SUPFAM:SSF53383	UniParc:UPI000152141C	ArrayExpress:VIT_00s0840g00010	EnsemblPlantsGene:VIT_00s0840g00010	EnsemblPlants:VIT_00s0840g00010.t01	RefSeq:XP_002269780
RefSeq:XP_002269780.1	:	:	:	:	:

Description

No Description!

Coordinates

chrUn:+:35960990..35962707

Molecular Weight (calculated)

53155.3 Da

IEP (calculated)

7.810

GRAVY (calculated)

-0.338

Length

469 amino acids

Sequence
(BLAST)

001: MKMLSRKATF NSHGQDSEYF LGWEEYEKNA YHEVENPSGI IQMGLAENQL SFDLLESWLA QNPDAAGFKR DGESIFRELA LFQDYHGLPA FKKALVEFMS
101: EIRGNKVSFD QNKLVLTAGA TSANETLMFC LANPGEAFLL PTPYYPGFDR DLKWRTGVEI VPIQCSSSNG FQITESALEE AYQQAQKRSL KVKGVLITNP
201: SNPLGTTTSR DELNLLVNFI TAKGIHLISD EIYSGTVFDS PGFVSIMEVL MDRNYMNTEV WKRVHIVYSL SKDLGLPGFR VGAIYSNDVA VVSAATKMSS
301: FGLVSSQTQY LLSVMLSDKK FTKNYVSENQ KRLKQRHQML ISGLQNAGID CLKSNAGLFC WVDMRHLLSS NTFEAEMELW KKILYDVRLN ISPGSSCHCT
401: EPGWFRVCFA NMSEDTLNLA LQRIKAFVDS STTTNNNQSR HQSNKNQRRK SFTKWVFRLS FRDREASER

Best Arabidopsis Sequence Match ( AT4G37770.1 )
(BLAST)

001: MGLLSKKASC NTHGQDSSYF WGWEEYEKNP YDEIKNPDGI IQMGLAENQL SFDLIESWLA KNPDAANFQR EGQSIFRELA LFQDYHGLPS FKNAMADFMS
101: ENRGNRVSFN PNKLVLTAGA TPANETLMFC LADPGDAFLL PTPYYPGFDR DLKWRTGAEI VPIQCKSANG FRITKVALEE AYEQAQKLNL KVKGVLITNP
201: SNPLGTTTTR TELNHLLDFI SRKKIHLISD EIYSGTVFTN PGFISVMEVL KDRKLENTDV FDRVHIVYSL SKDLGLPGFR VGVIYSNDDF VVSAATKMSS
301: FGLISSQTQY LLSALLSDKT FTKNYLEENQ IRLKNRHKKL VSGLEAAGIE CLKSNAGLFC WVDMRHLLKS NTFEAEIELW KKIVYEVKLN ISPGSSCHCN
401: EPGWFRVCFA NLSEETLKVA LDRLKRFVDG PSPTRRSQSE HQRLKNLRKM KVSNWVFRLS FHDREPEER

Arabidopsis Description

ACS81-aminocyclopropane-1-carboxylate synthase-like protein [Source:UniProtKB/TrEMBL;Acc:Q56Y32]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.