Factsheet for VIT_02s0025g04980.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

nucleus 3
plastid 2
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU7Hr1G053970.1	Barley	mitochondrion	2.82	62.82
HORVU2Hr1G119710.1	Barley	mitochondrion	3.34	59.79
PGSC0003DMT400010000	Potato	plastid	12.56	39.64
Solyc08g079750.2.1	Tomato	plastid	12.44	39.42
HORVU3Hr1G098750.1	Barley	cytosol, peroxisome	1.32	38.98
GSMUA_Achr5P13730_001	Banana	golgi, mitochondrion	10.94	37.77
HORVU3Hr1G016440.3	Barley	cytosol	6.68	37.18
VIT_16s0022g02010.t01	Wine grape	cytosol	11.18	36.06
GSMUA_Achr1P18880_001	Banana	golgi, mitochondrion	10.2	34.91
AT1G62960.1	Thale cress	plastid	11.06	34.47
CDY45965	Canola	cytosol	10.66	34.07
TraesCS7D01G060600.2	Wheat	golgi, mitochondrion	10.02	33.98
KRH27993	Soybean	endoplasmic reticulum, golgi, mitochondrion, plastid	9.79	33.93
Bra027008.1-P	Field mustard	cytosol	10.6	33.89
CDY45474	Canola	cytosol	10.02	33.27
KRH77442	Soybean	endoplasmic reticulum, mitochondrion, plasma membrane, plastid	9.56	33.07
Os06t0130400-01	Rice	plasma membrane	9.97	31.92
TraesCS7A01G066400.1	Wheat	cytosol, golgi, plastid	9.97	31.34
TraesCS4A01G422900.1	Wheat	golgi	9.97	31.28
EER87775	Sorghum	plastid	9.97	31.28
Zm00001d045479_P001	Maize	cytosol, peroxisome, plastid	9.74	30.62
HORVU7Hr1G012940.1	Barley	cytosol	9.91	28.71
GSMUA_Achr3P12300_001	Banana	mitochondrion	10.71	27.19
VIT_00s1764g00010.t01	Wine grape	cytosol	5.41	26.93
VIT_00s0840g00010.t01	Wine grape	cytosol	5.82	21.54
VIT_00s1437g00010.t01	Wine grape	cytosol	5.82	21.54
VIT_11s0016g02560.t01	Wine grape	cytosol, nucleus, peroxisome	5.47	21.35
VIT_02s0025g00360.t01	Wine grape	cytosol	5.76	20.79
VIT_02s0234g00090.t01	Wine grape	cytosol	5.88	20.16
VIT_18s0001g08520.t01	Wine grape	nucleus	5.36	19.91
VIT_15s0046g02220.t01	Wine grape	cytosol	4.67	18.49
VIT_09s0002g00340.t01	Wine grape	mitochondrion	3.23	10.65
VIT_00s0225g00130.t01	Wine grape	cytosol	2.88	10.39

Protein Annotations

EntrezGene:100244464	wikigene:100244464	Gene3D:3.40.640.10	Gene3D:3.90.1150.10	MapMan:50.4.4	InterPro:Aminotransferase_I/II
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0030170	InterPro:IPR015421	InterPro:IPR015422	EntrezGene:LOC100244464	wikigene:LOC100244464	PFAM:PF00155
PRINTS:PR00753	PANTHER:PTHR43795	PANTHER:PTHR43795:SF11	InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_dom1	InterPro:PyrdxlP-dep_Trfase_major
SUPFAM:SSF53383	UniParc:UPI00023E4081	ArrayExpress:VIT_02s0025g04980	EnsemblPlantsGene:VIT_02s0025g04980	EnsemblPlants:VIT_02s0025g04980.t01	RefSeq:XP_002281516
RefSeq:XP_002281516.2	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr2:+:4461926..4468028

Molecular Weight (calculated)

35951.1 Da

IEP (calculated)

8.852

GRAVY (calculated)

-0.043

Length

1736 amino acids

Sequence
(BLAST)

0001: MTRSRPSEPD EDSGPTTTGG GGGRGRTEMR VIVPLQGVVQ GRGGLVLGSV IPCALFYLLQ LYFKRHRSEP TPPPQKLTEV SELNRSLSRT HLPARGSSAP
0101: ACVSTRANSI VKSSDSPFYV GLKRVSEDPY DELSNPEGVI QLGLAENKLS LDLARDWLAE NAKDWILSGG GSSGPLSMGG IANYQASDGL VELKVAVAGF
0201: MSQVMERSIS FNPSQIVLTA GAAPAIEILS FCLADTGNAF LVPTPYYPSF DRDLKWRTGV EIIPVPCRSA DNFNLSISAL DLAFDQGKKR GLKVRGMVIS
0301: NPSNPVGNRL NGETXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
0401: XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
0501: XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
0601: XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
0701: XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
0801: XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
0901: XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
1001: XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
1101: XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
1201: XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
1301: XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
1401: XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
1501: XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
1601: XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
1701: XXXXXXXXXX XXXXXXXAMY KKGSMEEKVK FWWGLR

Best Arabidopsis Sequence Match ( AT1G01480.1 )
(BLAST)

001: MGLPGKNKGA VLSKIATNNQ HGENSEYFDG WKAYDKDPFH LSRNPHGIIQ MGLAENQLCL DLIKDWVKEN PEASICTLEG IHQFSDIANF QDYHGLKKFR
101: QAIAHFMGKA RGGRVTFDPE RVVMSGGATG ANETIMFCLA DPGDVFLIPS PYYAAFDRDL RWRTGVEIIP VPCSSSDNFK LTVDAAEWAY KKAQESNKKV
201: KGLILTNPSN PLGTMLDKDT LTNLVRFVTR KNIHLVVDEI YAATVFAGGD FVSVAEVVND VDISEVNVDL IHIVYSLSKD MGLPGFRVGI VYSFNDSVVS
301: CARKMSSFGL VSSQTQLMLA SMLSDDQFVD NFLMESSRRL GIRHKVFTTG IKKADIACLT SNAGLFAWMD LRHLLRDRNS FESEIELWHI IIDRVKLNVS
401: PGSSFRCTEP GWFRICFANM DDDTLHVALG RIQDFVSKNK NKIVEKASEN DQVIQNKSAK KLKWTQTNLR LSFRRLYEDG LSSPGIMSPH SPLLRA

Arabidopsis Description

ACS21-aminocyclopropane-1-carboxylate synthase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q06402]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.