Factsheet for VIT_11s0016g02560.t01

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, nucleus, cytosol

Predictor Summary:

nucleus 2
plastid 2
peroxisome 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_00s0840g00010.t01
VIT_00s1437g00010.t01
VIT_11s0016g02560.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G26200.1	VIT_00s0840g00010.t01	AT2G22810.1	14983000
AT4G26200.1	VIT_00s1437g00010.t01	AT2G22810.1	14983000
AT4G26200.1	VIT_11s0016g02560.t01	AT4G26200.1	14983000

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH41440	Soybean	cytosol	85.17	86.14
KRH60148	Soybean	cytosol	84.94	85.91
KRH49039	Soybean	cytosol	84.49	84.3
KRH74169	Soybean	cytosol	84.04	83.86
PGSC0003DMT400043903	Potato	cytosol	81.12	81.86
PGSC0003DMT400000771	Potato	cytosol	79.33	81.34
Solyc07g026900.1.1	Tomato	cytosol	80.45	81.18
Solyc12g008740.1.1	Tomato	cytosol	78.88	80.88
CDX89355	Canola	cytosol	76.18	75.67
CDY72652	Canola	cytosol	34.16	75.62
AT4G26200.1	Thale cress	cytosol	75.96	75.62
CDX94359	Canola	cytosol	75.96	75.45
Bra026456.1-P	Field mustard	cytosol	75.96	75.45
CDY71142	Canola	cytosol	75.73	75.22
CDY42751	Canola	cytosol	74.83	73.84
Bra019117.1-P	Field mustard	cytosol	74.83	73.84
GSMUA_Achr4P30870_001	Banana	cytosol	69.89	73.7
CDX92755	Canola	cytosol	68.54	73.32
GSMUA_Achr10P...	Banana	cytosol	71.46	72.27
TraesCS3D01G108700.1	Wheat	cytosol, plastid	68.99	67.92
TraesCS3A01G106600.1	Wheat	cytosol, plastid	68.54	67.48
TraesCS3B01G125200.1	Wheat	plastid	68.76	67.25
EES00139	Sorghum	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	69.89	67.17
Os05t0196600-00	Rice	cytosol	66.74	65.71
Zm00001d039487_P001	Maize	mitochondrion	67.19	64.72
HORVU3Hr1G019430.6	Barley	cytosol, mitochondrion	59.33	61.4
Os05t0319200-00	Rice	cytosol, mitochondrion, plastid	66.29	59.48
VIT_00s0840g00010.t01	Wine grape	cytosol	59.78	56.72
VIT_00s1437g00010.t01	Wine grape	cytosol	59.55	56.5
Os01t0192900-00	Rice	endoplasmic reticulum, plasma membrane	66.29	55.35
VIT_18s0001g08520.t01	Wine grape	nucleus	57.53	54.82
VIT_02s0025g00360.t01	Wine grape	cytosol	58.43	54.05
VIT_15s0046g02220.t01	Wine grape	cytosol	52.81	53.65
VIT_02s0234g00090.t01	Wine grape	cytosol	57.3	50.4
VIT_00s1764g00010.t01	Wine grape	cytosol	33.03	42.12
VIT_16s0022g02010.t01	Wine grape	cytosol	45.17	37.36
HORVU3Hr1G019410.1	Barley	endoplasmic reticulum	16.18	31.17
VIT_00s0225g00130.t01	Wine grape	cytosol	20.67	19.13
VIT_09s0002g00340.t01	Wine grape	mitochondrion	20.0	16.92
VIT_02s0025g04980.t01	Wine grape	cytosol, nucleus	21.35	5.47

Protein Annotations

EntrezGene:100261151	wikigene:100261151	MapMan:11.5.1.1	Gene3D:3.40.640.10	Gene3D:3.90.1150.10	EMBL:AM429962
InterPro:Aminotransferase_I/II	ProteinID:CAN66901	ProteinID:CAN66901.1	ProteinID:CCB51464	ProteinID:CCB51464.1	UniProt:F6HGS0
EMBL:FN595756	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0030170	InterPro:IPR015421	InterPro:IPR015422	EntrezGene:LOC100261151	wikigene:LOC100261151
InterPro:NHTrfase_class1_PyrdxlP-BS	PFAM:PF00155	PRINTS:PR00753	ScanProsite:PS00105	PANTHER:PTHR43795	PANTHER:PTHR43795:SF28
InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_dom1	InterPro:PyrdxlP-dep_Trfase_major	SUPFAM:SSF53383	UniParc:UPI00015C8C48	ArrayExpress:VIT_11s0016g02560
EnsemblPlantsGene:VIT_11s0016g02560	EnsemblPlants:VIT_11s0016g02560.t01	RefSeq:XP_002279881	RefSeq:XP_002279881.1	SEG:seg	:

Description

No Description!

Coordinates

chr11:+:2051434..2053148

Molecular Weight (calculated)

50009.4 Da

IEP (calculated)

5.986

GRAVY (calculated)

-0.290

Length

445 amino acids

Sequence
(BLAST)

001: MAIEIDQQPP VGLSRVAVSE THGEDSPYFA GWKAYDENPY DESKNPSGVI QMGLAENQVS FDLLEEFLKQ HSEASSWGNK ISGFRENALF QDYHGLQSFR
101: KAMASFMEQI RGGRAKFDPD RVVLTAGATA ANELLTFILA DPGDALLVPT PYYPGFDRDL RWRTSVKIVP IHCDSSNNFQ VTPQALEAAY NNAEAMNIKV
201: RGVLITNPSN PLGTTIQRSV LEEILDFVTR KNIHLVSDEI YSGSVFSSSE FVSIAEVLEA RNNKGSERVH IVYSLSKDLG LPGFRVGTIY SYNDKVVTTA
301: RRMSSFTLIS SQTQHLLASM LSDKEFTQNY IETNRERLRK RYEMIIQGLR VAGIECLQGN AGLFCWMNLS PLLETPTREG ELALWNSILH EVKLNISPGS
401: SCHCSEPGWF RVCFANMSEQ TLEVALDRIH QFMKRRCDKE KLGHV

Best Arabidopsis Sequence Match ( AT4G26200.1 )
(BLAST)

001: MGLPLMMERS SNNNNVELSR VAVSDTHGED SPYFAGWKAY DENPYDESHN PSGVIQMGLA ENQVSFDLLE TYLEKKNPEG SMWGSKGAPG FRENALFQDY
101: HGLKTFRQAM ASFMEQIRGG KARFDPDRIV LTAGATAANE LLTFILADPN DALLVPTPYY PGFDRDLRWR TGVKIVPIHC DSSNHFQITP EALESAYQTA
201: RDANIRVRGV LITNPSNPLG ATVQKKVLED LLDFCVRKNI HLVSDEIYSG SVFHASEFTS VAEIVENIDD VSVKERVHIV YSLSKDLGLP GFRVGTIYSY
301: NDNVVRTARR MSSFTLVSSQ TQHMLASMLS DEEFTEKYIR INRERLRRRY DTIVEGLKKA GIECLKGNAG LFCWMNLGFL LEKKTKDGEL QLWDVILKEL
401: NLNISPGSSC HCSEVGWFRV CFANMSENTL EIALKRIHEF MDRRRRF

Arabidopsis Description

ACS71-aminocyclopropane-1-carboxylate synthase 7 [Source:UniProtKB/Swiss-Prot;Acc:Q9STR4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.