CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, endoplasmic reticulum, vacuole, mitochondrion, plastid, cytosol, plasma membrane, golgi

Predictor Summary:

nucleus 1
plastid 3
mitochondrion 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion, plastid, secretory
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	plastid
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Plant-mPloc:	plastid
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
EER90948
EES00139

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G26200.1	EER90948	AT2G22810.1	14983000
AT4G26200.1	EES00139	AT4G26200.1	14983000

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d039487_P001	Maize	mitochondrion	92.01	92.21
TraesCS3A01G106600.1	Wheat	cytosol, plastid	85.96	88.05
TraesCS3D01G108700.1	Wheat	cytosol, plastid	85.75	87.83
TraesCS3B01G125200.1	Wheat	plastid	86.18	87.69
HORVU3Hr1G019430.6	Barley	cytosol, mitochondrion	73.65	79.3
Os05t0319200-00	Rice	cytosol, mitochondrion, plastid	80.13	74.8
CDY72652	Canola	cytosol	32.18	74.13
KRH41440	Soybean	cytosol	68.68	72.27
KRH60148	Soybean	cytosol	67.6	71.14
AT4G26200.1	Thale cress	cytosol	68.25	70.69
Bra026456.1-P	Field mustard	cytosol	68.03	70.31
Bra019117.1-P	Field mustard	cytosol	68.47	70.29
CDY42751	Canola	cytosol	68.47	70.29
KRH49039	Soybean	cytosol	67.6	70.18
CDY71142	Canola	cytosol	67.82	70.09
CDX94359	Canola	cytosol	67.82	70.09
CDX89355	Canola	cytosol	67.82	70.09
VIT_11s0016g02560.t01	Wine grape	cytosol, nucleus, peroxisome	67.17	69.89
CDX92755	Canola	cytosol	62.42	69.47
KRH74169	Soybean	cytosol	66.74	69.28
GSMUA_Achr10P...	Banana	cytosol	65.66	69.09
Solyc12g008740.1.1	Tomato	cytosol	63.93	68.2
Solyc07g026900.1.1	Tomato	cytosol	64.79	68.03
GSMUA_Achr4P30870_001	Banana	cytosol	61.34	67.3
EER90948	Sorghum	cytosol	56.16	52.31
EES12700	Sorghum	cytosol	53.13	50.1
EER87775	Sorghum	plastid	43.41	36.35
OQU91865	Sorghum	cytosol	12.31	18.81
KXG34265	Sorghum	cytosol	19.01	18.41
KXG35682	Sorghum	cytosol	19.65	18.38
KXG38638	Sorghum	cytosol	19.44	18.22
EER99708	Sorghum	mitochondrion	20.3	17.38

Protein Annotations

MapMan:11.5.1.1	Gene3D:3.40.640.10	Gene3D:3.90.1150.10	EntrezGene:8084354	InterPro:Aminotransferase_I/II	UniProt:C5XLY3
EnsemblPlants:EES00139	ProteinID:EES00139	ProteinID:EES00139.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005515	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016847
GO:GO:0030170	GO:GO:0042218	GO:GO:0042802	InterPro:IPR015421	InterPro:IPR015422	InterPro:NHTrfase_class1_PyrdxlP-BS
PFAM:PF00155	PRINTS:PR00753	ScanProsite:PS00105	PANTHER:PTHR43795	PANTHER:PTHR43795:SF28	InterPro:PyrdxlP-dep_Trfase
InterPro:PyrdxlP-dep_Trfase_dom1	InterPro:PyrdxlP-dep_Trfase_major	EnsemblPlantsGene:SORBI_3003G033900	SUPFAM:SSF53383	unigene:Sbi.8999	UniParc:UPI0001A84436
RefSeq:XP_002455019.1	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr3:+:3090015..3092288

Molecular Weight (calculated)

50288.0 Da

IEP (calculated)

6.955

GRAVY (calculated)

-0.056

Length

463 amino acids

Sequence
(BLAST)

001: MGGKLLLGAN QSHAAAAASP APLSKVATSG LHGEDSPYFA GWKAYDENPY DAATNPGGVI QMGLAENQVS FDLLEGYLRD HPEAASWGGA AAGSGVASFR
101: DNALFQDYHG LKAFRMAMAS FMEKIRGGKA RFDPDRIVLT AGATAANELL TFILANPGDA LLIPTPYYPG FDRDLRWRTG VNIVPVHCDS ANGFQVTVAA
201: LQAAYEEAEA AGMRVRAVLL TNPSNPLGTT VKRSVLEDVL DFVVRHNIHL ISDEIYSGSV FAAPDLVSVA ELVESRGGVA ERVHIVYSLS KDLGLPGFRV
301: GVVYSYNDAV VTTARRMSSF TLVSSQTQKT LAAMLSDAEF ADAYIRTNRQ RLRARHDHIV AGLARAGVPC LRGNAGLFVW MDMRRLLGEA TVAGELRLWD
401: RMLREVKLNI SPGSSCHCSE PGWFRVCFAN MSLDTLDVAL ARMSRFMDRW NKETAVSTQQ QQH

Best Arabidopsis Sequence Match ( AT4G26200.1 )
(BLAST)

001: MGLPLMMERS SNNNNVELSR VAVSDTHGED SPYFAGWKAY DENPYDESHN PSGVIQMGLA ENQVSFDLLE TYLEKKNPEG SMWGSKGAPG FRENALFQDY
101: HGLKTFRQAM ASFMEQIRGG KARFDPDRIV LTAGATAANE LLTFILADPN DALLVPTPYY PGFDRDLRWR TGVKIVPIHC DSSNHFQITP EALESAYQTA
201: RDANIRVRGV LITNPSNPLG ATVQKKVLED LLDFCVRKNI HLVSDEIYSG SVFHASEFTS VAEIVENIDD VSVKERVHIV YSLSKDLGLP GFRVGTIYSY
301: NDNVVRTARR MSSFTLVSSQ TQHMLASMLS DEEFTEKYIR INRERLRRRY DTIVEGLKKA GIECLKGNAG LFCWMNLGFL LEKKTKDGEL QLWDVILKEL
401: NLNISPGSSC HCSEVGWFRV CFANMSENTL EIALKRIHEF MDRRRRF

Arabidopsis Description

ACS71-aminocyclopropane-1-carboxylate synthase 7 [Source:UniProtKB/Swiss-Prot;Acc:Q9STR4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.