CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH04373
KRH28319
KRH41440
KRH49039
KRH58165
KRH60148
KRH74169
KRH77167

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G26200.1	KRH04373	AT2G22810.1	14983000
AT4G26200.1	KRH28319	AT2G22810.1	14983000
AT4G26200.1	KRH58165	AT2G22810.1	14983000
AT4G26200.1	KRH77167	AT2G22810.1	14983000
AT4G26200.1	KRH41440	AT4G26200.1	14983000
AT4G26200.1	KRH49039	AT4G26200.1	14983000
AT4G26200.1	KRH60148	AT4G26200.1	14983000
AT4G26200.1	KRH74169	AT4G26200.1	14983000

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH49039	Soybean	cytosol	95.07	95.07
KRH41440	Soybean	cytosol	89.01	90.23
KRH60148	Soybean	cytosol	88.56	89.77
VIT_11s0016g02560.t01	Wine grape	cytosol, nucleus, peroxisome	83.86	84.04
PGSC0003DMT400043903	Potato	cytosol	78.48	79.37
CDY72652	Canola	cytosol	35.65	79.1
Solyc07g026900.1.1	Tomato	cytosol	77.58	78.46
PGSC0003DMT400000771	Potato	cytosol	75.56	77.65
Solyc12g008740.1.1	Tomato	cytosol	75.11	77.19
AT4G26200.1	Thale cress	cytosol	77.35	77.18
CDX94359	Canola	cytosol	76.68	76.34
CDX89355	Canola	cytosol	76.46	76.12
Bra026456.1-P	Field mustard	cytosol	76.23	75.89
CDY71142	Canola	cytosol	76.23	75.89
Bra019117.1-P	Field mustard	cytosol	75.78	74.94
CDY42751	Canola	cytosol	75.78	74.94
CDX92755	Canola	cytosol	68.61	73.56
GSMUA_Achr4P30870_001	Banana	cytosol	67.71	71.56
GSMUA_Achr10P...	Banana	cytosol	70.4	71.36
EES00139	Sorghum	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	69.28	66.74
TraesCS3D01G108700.1	Wheat	cytosol, plastid	67.26	66.37
TraesCS3B01G125200.1	Wheat	plastid	67.26	65.93
TraesCS3A01G106600.1	Wheat	cytosol, plastid	66.82	65.93
Zm00001d039487_P001	Maize	mitochondrion	67.71	65.37
Os05t0196600-00	Rice	cytosol	65.47	64.6
HORVU3Hr1G019430.6	Barley	cytosol, mitochondrion	57.62	59.77
Os05t0319200-00	Rice	cytosol, mitochondrion, plastid	64.35	57.86
KRH61460	Soybean	cytosol	43.95	56.0
Os01t0192900-00	Rice	endoplasmic reticulum, plasma membrane	66.59	55.72
KRH04373	Soybean	cytosol	57.4	53.89
KRH28319	Soybean	cytosol	56.5	53.5
KRH77167	Soybean	cytosol	56.05	53.19
KRH58165	Soybean	cytosol	56.73	52.71
KRH41241	Soybean	cytosol	56.5	52.07
KRH52156	Soybean	cytosol	54.26	51.82
KRH06585	Soybean	cytosol	54.93	51.69
KRH59970	Soybean	cytosol	55.83	51.45
KRH48058	Soybean	cytosol	54.48	51.27
KRH27892	Soybean	cytosol	54.26	50.42
KRH00855	Soybean	cytosol	53.36	49.58
KRH40379	Soybean	cytosol	52.91	48.66
KRH65284	Soybean	cytosol	13.0	47.15
KRH77442	Soybean	endoplasmic reticulum, mitochondrion, plasma membrane, plastid	41.48	36.85
KRH38710	Soybean	plastid	43.5	36.67
KRH27993	Soybean	endoplasmic reticulum, golgi, mitochondrion, plastid	40.81	36.33
KRH09217	Soybean	plastid	42.6	35.98
HORVU3Hr1G019410.1	Barley	endoplasmic reticulum	15.7	30.3
KRH69622	Soybean	cytosol	19.96	18.5
KRH74536	Soybean	cytosol	19.96	18.5
KRH47719	Soybean	endoplasmic reticulum	20.18	16.64
KRH06285	Soybean	mitochondrion	19.96	16.6

Protein Annotations

EntrezGene:100791024	MapMan:11.5.1.1	Gene3D:3.40.640.10	Gene3D:3.90.1150.10	EMBL:ACUP02000007	InterPro:Aminotransferase_I/II
EnsemblPlantsGene:GLYMA_01G003900	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0030170	UniProt:I1J4D1	InterPro:IPR015421	InterPro:IPR015422	EnsemblPlants:KRH74169
ProteinID:KRH74169	ProteinID:KRH74169.1	InterPro:NHTrfase_class1_PyrdxlP-BS	PFAM:PF00155	PRINTS:PR00753	ScanProsite:PS00105
PANTHER:PTHR43795	PANTHER:PTHR43795:SF28	InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_dom1	InterPro:PyrdxlP-dep_Trfase_major	SUPFAM:SSF53383
UniParc:UPI0002958427	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:411125..413137

Molecular Weight (calculated)

50179.8 Da

IEP (calculated)

6.200

GRAVY (calculated)

-0.262

Length

446 amino acids

Sequence
(BLAST)

001: MGIEMEQPCV ELSKVAVSET HGEDSPYFAG WKAYDENPYA ELTNPSGVIQ MGLAENQVSF DLLEKYLEEH SEASTWGKGA PGFRENALFQ DYHGLKTFRT
101: AMASFMEQVR GGRAKFDPQR VVLTAGATAA NELLTFILAN PGDALLVPTP YYPGFDRDLR WRTGVNIVPI HCDSSNNFQI TPEALEAAYK DAEAMNSKVR
201: GVLITNPSNP LGVTIPLSVL EEILDFVTRK NIHLVSDEIY SGSVFSSSEF FTSVAEVLEA RQYRNAERVH IVYSLSKDLG LPGFRVGTIY SYNDKVVTTA
301: RRMSSFTLIS SQTQHLLASM LSDKEFTENY IKTNRERLRK RNQMIIEGLR SAGIECLKGN AGLFCWMNLS PLLEKNKPKG REGELELWNA ILHQVKLNIS
401: PGSSCHCSEP GWFRVCFANM SEQTLEIALQ RIRHFVERIR TQNVFF

Best Arabidopsis Sequence Match ( AT4G26200.1 )
(BLAST)

001: MGLPLMMERS SNNNNVELSR VAVSDTHGED SPYFAGWKAY DENPYDESHN PSGVIQMGLA ENQVSFDLLE TYLEKKNPEG SMWGSKGAPG FRENALFQDY
101: HGLKTFRQAM ASFMEQIRGG KARFDPDRIV LTAGATAANE LLTFILADPN DALLVPTPYY PGFDRDLRWR TGVKIVPIHC DSSNHFQITP EALESAYQTA
201: RDANIRVRGV LITNPSNPLG ATVQKKVLED LLDFCVRKNI HLVSDEIYSG SVFHASEFTS VAEIVENIDD VSVKERVHIV YSLSKDLGLP GFRVGTIYSY
301: NDNVVRTARR MSSFTLVSSQ TQHMLASMLS DEEFTEKYIR INRERLRRRY DTIVEGLKKA GIECLKGNAG LFCWMNLGFL LEKKTKDGEL QLWDVILKEL
401: NLNISPGSSC HCSEVGWFRV CFANMSENTL EIALKRIHEF MDRRRRF

Arabidopsis Description

ACS71-aminocyclopropane-1-carboxylate synthase 7 [Source:UniProtKB/Swiss-Prot;Acc:Q9STR4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.