CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH52586
KRH61926

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G08040.1	KRH52586	AT1G71230.1	21798944
AT4G08040.1	KRH61926	AT1G71230.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH52156	Soybean	cytosol	95.14	71.31
VIT_18s0001g08520.t01	Wine grape	nucleus	68.86	51.61
AT4G08040.1	Thale cress	cytosol	66.86	50.87
KRH77167	Soybean	cytosol	67.43	50.21
KRH04373	Soybean	cytosol	68.0	50.11
Bra000637.1-P	Field mustard	cytosol	66.0	49.78
CDX83146	Canola	cytosol	66.0	49.78
CDY34015	Canola	cytosol	66.0	49.78
PGSC0003DMT400012600	Potato	cytosol	66.0	49.46
KRH28319	Soybean	cytosol	66.29	49.26
KRH58165	Soybean	cytosol	67.43	49.17
Solyc04g077410.2.1	Tomato	cytosol	65.43	48.62
KRH60148	Soybean	cytosol	57.14	45.45
KRH41440	Soybean	cytosol	56.86	45.23
KRH74169	Soybean	cytosol	56.0	43.95
KRH49039	Soybean	cytosol	56.0	43.95
KRH27892	Soybean	cytosol	54.86	40.0
KRH06585	Soybean	cytosol	51.71	38.19
KRH48058	Soybean	cytosol	51.71	38.19
KRH41241	Soybean	cytosol	52.0	37.6
KRH59970	Soybean	cytosol	51.14	36.98
KRH00855	Soybean	cytosol	49.71	36.25
KRH40379	Soybean	cytosol	48.86	35.26
KRH09217	Soybean	plastid	45.71	30.3
KRH38710	Soybean	plastid	45.14	29.87
KRH65284	Soybean	cytosol	10.29	29.27
KRH77442	Soybean	endoplasmic reticulum, mitochondrion, plasma membrane, plastid	40.86	28.49
KRH27993	Soybean	endoplasmic reticulum, golgi, mitochondrion, plastid	39.14	27.35
KRH69622	Soybean	cytosol	20.57	14.97
KRH74536	Soybean	cytosol	20.29	14.76
KRH47719	Soybean	endoplasmic reticulum	21.43	13.86
KRH06285	Soybean	mitochondrion	20.86	13.62

Protein Annotations

MapMan:11.5.1.1	Gene3D:3.40.640.10	Gene3D:3.90.1150.10	UniProt:A0A0R0KBV4	EMBL:ACUP02002168	InterPro:Aminotransferase_I/II
EnsemblPlantsGene:GLYMA_04G048700	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0030170	InterPro:IPR015421	InterPro:IPR015422	EnsemblPlants:KRH61460	ProteinID:KRH61460
ProteinID:KRH61460.1	InterPro:NHTrfase_class1_PyrdxlP-BS	PFAM:PF00155	PRINTS:PR00753	ScanProsite:PS00105	PANTHER:PTHR43795
PANTHER:PTHR43795:SF10	InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_dom1	InterPro:PyrdxlP-dep_Trfase_major	SUPFAM:SSF53383	UniParc:UPI0006EE19EF

Description

hypothetical protein

Coordinates

chr4:+:3941608..3943357

Molecular Weight (calculated)

39034.4 Da

IEP (calculated)

9.106

GRAVY (calculated)

-0.081

Length

350 amino acids

Sequence
(BLAST)

001: MAKIRGNGVK FASEKLVLTA GATPANEILM FCLADPGEAF ILPTPYYPGF DRDLKWRTGV EIVPMHCSSS NGFRITSSAL EQAYQQAQKL NLKIKGVLVT
101: NPSNPLGITM TKTELNHLVD FAIDKNIHII SDEIYSGTVF DSPKFVSITE VVNERITSVS NNNIWNRIHI VYSLSKDLGI PGFRVGMIYS NNETVVTAAT
201: KMSSFGLVSS QTQYLVANLL KDKKFTCKYM EETQKRLKRR KEKLVSGLRN AGIRCLESNA GLFCWVDLRH LLGSATFEAE KELWMKILCK VGLNISPGSS
301: CHCCEPGWFR VCFANMSQDT LEVAMRRMKA FADSTISTSV LRGSIAKWEN

Best Arabidopsis Sequence Match ( AT2G22810.1 )
(BLAST)

001: MVQLSRKATC NSHGQVSSYF LGWEEYEKNP YDVTKNPQGI IQMGLAENQL CFDLLESWLA QNTDAACFKR DGQSVFRELA LFQDYHGLSS FKNAFADFMS
101: ENRGNRVSFD SNNLVLTAGA TSANETLMFC LADPGDAFLL PTPYYPGFDR DLKWRTGVEI VPIQSSSTNG FRITKLALEE AYEQAKKLDL NVKGILITNP
201: SNPLGTTTTQ TELNILFDFI TKNKNIHLVS DEIYSGTVFN SSEFISVMEI LKNNQLENTD VLNRVHIVCS LSKDLGLPGF RVGAIYSNDK DVISAATKMS
301: SFGLVSSQTQ YLLSSLLSDK KFTKNYLREN QKRLKNRQRK LVLGLEAIGI KCLKSNAGLF CWVDMRPLLR SKTFEAEMDL WKKIVYEVKL NISPGSSCHC
401: EEPGWFRVCF ANMIDETLKL ALKRLKMLVD DENSSRRCQK SKSERLNGSR KKTMSNVSNW VFRLSFHDRE AEER

Arabidopsis Description

ACS41-aminocyclopropane-1-carboxylate synthase 4 [Source:UniProtKB/Swiss-Prot;Acc:Q43309]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.