CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH02667
KRH12454
KRH19237
KRH37441

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G01480.1	KRH02667	AT4G26080.1	19705149
AT1G01480.1	KRH12454	AT4G26080.1	19705149
AT1G01480.1	KRH19237	AT4G26080.1	19705149
AT1G01480.1	KRH37441	AT4G26080.1	19705149

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH48058	Soybean	cytosol	95.36	95.36
KRH00855	Soybean	cytosol	80.59	79.58
KRH40379	Soybean	cytosol	80.38	78.56
VIT_15s0046g02220.t01	Wine grape	cytosol	63.71	68.95
KRH65284	Soybean	cytosol	17.72	68.29
PGSC0003DMT400000553	Potato	cytosol	68.14	66.46
Solyc01g095080.2.1	Tomato	cytosol	67.93	66.39
KRH41241	Soybean	cytosol	67.72	66.32
KRH27892	Soybean	cytosol	66.46	65.62
KRH59970	Soybean	cytosol	66.88	65.5
CDY15174	Canola	cytosol	65.61	62.7
GSMUA_AchrUn_...	Banana	cytosol	58.02	62.08
GSMUA_Achr4P29150_001	Banana	cytosol	63.5	61.93
Bra033261.1-P	Field mustard	cytosol	64.98	61.72
GSMUA_Achr4P24930_001	Banana	cytosol	62.45	61.54
AT1G01480.1	Thale cress	cytosol	64.35	61.49
Solyc05g050010.2.1	Tomato	cytosol	61.39	61.13
CDX90035	Canola	cytosol	57.59	61.07
TraesCS2B01G414800.1	Wheat	cytosol	61.39	59.88
TraesCS2A01G396400.1	Wheat	cytosol	60.97	59.47
TraesCS2D01G394200.1	Wheat	cytosol	60.97	59.47
PGSC0003DMT400084228	Potato	cytosol	21.94	59.43
Os04t0578000-01	Rice	cytosol	60.34	59.21
EES12700	Sorghum	cytosol	60.97	58.86
Zm00001d002592_P002	Maize	cytosol	59.92	58.56
KRH60148	Soybean	cytosol	52.11	56.14
Zm00001d026060_P003	Maize	cytosol	59.92	55.69
KRH41440	Soybean	cytosol	51.69	55.68
KRH74169	Soybean	cytosol	51.69	54.93
KRH49039	Soybean	cytosol	51.27	54.48
KRH61460	Soybean	cytosol	38.19	51.71
PGSC0003DMT400055753	Potato	vacuole	41.14	51.32
KRH77167	Soybean	cytosol	49.37	49.79
KRH04373	Soybean	cytosol	49.58	49.47
KRH28319	Soybean	cytosol	48.95	49.26
KRH58165	Soybean	cytosol	49.16	48.54
KRH52156	Soybean	cytosol	47.26	47.97
HORVU2Hr1G094230.2	Barley	cytosol	47.89	46.9
KRH27993	Soybean	endoplasmic reticulum, golgi, mitochondrion, plastid	35.23	33.33
KRH77442	Soybean	endoplasmic reticulum, mitochondrion, plasma membrane, plastid	35.02	33.07
KRH38710	Soybean	plastid	36.08	32.33
KRH09217	Soybean	plastid	35.87	32.2
KRH74536	Soybean	cytosol	17.93	17.67
KRH69622	Soybean	cytosol	17.72	17.46
KRH47719	Soybean	endoplasmic reticulum	19.2	16.82
KRH06285	Soybean	mitochondrion	18.99	16.79

Protein Annotations

EntrezGene:100813347	MapMan:11.5.1.1	Gene3D:3.40.640.10	Gene3D:3.90.1150.10	EMBL:ACUP02009850	InterPro:Aminotransferase_I/II
EnsemblPlantsGene:GLYMA_16G032200	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0030170	UniProt:I1MKS0	InterPro:IPR015421	InterPro:IPR015422	EnsemblPlants:KRH06585
ProteinID:KRH06585	ProteinID:KRH06585.1	InterPro:NHTrfase_class1_PyrdxlP-BS	PFAM:PF00155	PRINTS:PR00753	ScanProsite:PS00105
PANTHER:PTHR43795	PANTHER:PTHR43795:SF25	InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_dom1	InterPro:PyrdxlP-dep_Trfase_major	SUPFAM:SSF53383
UniParc:UPI00023D6CCD	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr16:+:3050719..3054820

Molecular Weight (calculated)

53838.5 Da

IEP (calculated)

7.098

GRAVY (calculated)

-0.285

Length

474 amino acids

Sequence
(BLAST)

001: MVSQQLLSKI ATNDKHGENS PYFDGWKAYD RNPFHPTKNP QGVIQMGLAE NQLCFDLIEE WIRNNPRASI CTPEGVHQFR NIANFQDYHG LREFTNEMAN
101: FMSKVRGGRV KFDPDRILMS GGATGANELI MFCLADPGDA FMIPTPFYPG FVRDLCWRTG VQIIPVHCDS SNNFKITREA LEVAYKKAKE DNINVKGLII
201: TNPSNPLGTT LDKDTLKSLV NFINEKNIHL VCDEIYAATV FSSPSYVSVA EVIQEMEHCK RDLIHVIYSL SKDMGFPGFR VGIVYSFNDE VVNCGRKMSS
301: FGLVSTQTQH MLASMFSDEK FVTRFLSENS RRLEQRHEKF MKGLEEVNIT RFPSNAGLFC WMNLKSLLEE PSFEAELKLW RVIIHEVKLN VSPGSSFNCS
401: EPGWFRVCFA NMDDETVDVA LNRIRAFVGK ETKKSVGFKR WQPNLRLSFS SRIFDESVMS PHSPIPTSPL VGAN

Best Arabidopsis Sequence Match ( AT3G61510.1 )
(BLAST)

001: MSQGACENQL LSKLALSDKH GEASPYFHGW KAYDNNPFHP THNPQGVIQM GLAENQLCSD LIKEWIKENP QASICTAEGI DSFSDIAVFQ DYHGLKQFRQ
101: AIATFMERAR GGRVRFEAER VVMSGGATGA NETIMFCLAD PGDAFLVPTP YYAAFDRDLR WRTGVRIIPV ECSSSNNFQI TKQALESAYL KAQETGIKIK
201: GLIISNPLGT SLDRETLESL VSFINDKQIH LVCDEIYAAT VFAEPGFISV AEIIQEMYYV NRDLIHIVYS LSKDMGLPGF RVGVVYSYND VVVSCARRMS
301: SFGLVSSQTQ SFLAAMLSDQ SFVDNFLVEV SKRVAKRHHM FTEGLEEMGI SCLRSNAGLF VLMDLRHMLK DQTFDSEMAL WRVIINKVKI NVSPGSSFHC
401: SEPGWFRVCF ANMDEDTLQI ALERIKDFVV GDRANKNKNC NCICNNKREN KKRKSFQKNL KLSLSSMRYE EHVRSPKLMS PHSPLLRA

Arabidopsis Description

ACS11-aminocyclopropane-1-carboxylate synthase-like protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q06429]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.