CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH02667
KRH12454
KRH19237
KRH37441

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G01480.1	KRH02667	AT4G26080.1	19705149
AT1G01480.1	KRH12454	AT4G26080.1	19705149
AT1G01480.1	KRH19237	AT4G26080.1	19705149
AT1G01480.1	KRH37441	AT4G26080.1	19705149

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH06585	Soybean	cytosol	95.36	95.36
KRH00855	Soybean	cytosol	80.17	79.17
KRH40379	Soybean	cytosol	79.96	78.14
VIT_15s0046g02220.t01	Wine grape	cytosol	63.71	68.95
KRH65284	Soybean	cytosol	17.72	68.29
Solyc01g095080.2.1	Tomato	cytosol	68.35	66.8
KRH41241	Soybean	cytosol	68.14	66.74
PGSC0003DMT400000553	Potato	cytosol	68.35	66.67
KRH59970	Soybean	cytosol	66.88	65.5
KRH27892	Soybean	cytosol	65.82	65.0
GSMUA_AchrUn_...	Banana	cytosol	58.23	62.3
CDY15174	Canola	cytosol	64.98	62.1
GSMUA_Achr4P29150_001	Banana	cytosol	63.5	61.93
GSMUA_Achr4P24930_001	Banana	cytosol	62.45	61.54
Solyc05g050010.2.1	Tomato	cytosol	61.6	61.34
CDX90035	Canola	cytosol	57.81	61.3
Bra033261.1-P	Field mustard	cytosol	64.35	61.12
AT1G01480.1	Thale cress	cytosol	63.92	61.09
TraesCS2B01G414800.1	Wheat	cytosol	61.18	59.67
PGSC0003DMT400084228	Potato	cytosol	21.94	59.43
TraesCS2D01G394200.1	Wheat	cytosol	60.76	59.26
TraesCS2A01G396400.1	Wheat	cytosol	60.76	59.26
Os04t0578000-01	Rice	cytosol	60.34	59.21
Zm00001d002592_P002	Maize	cytosol	60.13	58.76
EES12700	Sorghum	cytosol	60.76	58.66
KRH60148	Soybean	cytosol	51.9	55.91
Zm00001d026060_P003	Maize	cytosol	60.13	55.88
KRH41440	Soybean	cytosol	51.48	55.45
KRH74169	Soybean	cytosol	51.27	54.48
KRH49039	Soybean	cytosol	50.63	53.81
KRH61460	Soybean	cytosol	38.19	51.71
PGSC0003DMT400055753	Potato	vacuole	41.35	51.58
KRH77167	Soybean	cytosol	49.16	49.57
KRH04373	Soybean	cytosol	49.37	49.26
KRH28319	Soybean	cytosol	48.73	49.04
KRH58165	Soybean	cytosol	48.95	48.33
KRH52156	Soybean	cytosol	46.84	47.54
HORVU2Hr1G094230.2	Barley	cytosol	47.89	46.9
KRH27993	Soybean	endoplasmic reticulum, golgi, mitochondrion, plastid	35.65	33.73
KRH77442	Soybean	endoplasmic reticulum, mitochondrion, plasma membrane, plastid	35.02	33.07
KRH38710	Soybean	plastid	36.71	32.89
KRH09217	Soybean	plastid	36.5	32.77
KRH74536	Soybean	cytosol	18.14	17.88
KRH69622	Soybean	cytosol	17.93	17.67
KRH47719	Soybean	endoplasmic reticulum	19.62	17.19
KRH06285	Soybean	mitochondrion	19.41	17.16

Protein Annotations

EntrezGene:100817401	MapMan:11.5.1.1	Gene3D:3.40.640.10	Gene3D:3.90.1150.10	EMBL:ACUP02004198	InterPro:Aminotransferase_I/II
EnsemblPlantsGene:GLYMA_07G065700	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0030170	UniProt:I1KI46	InterPro:IPR015421	InterPro:IPR015422	EnsemblPlants:KRH48058
ProteinID:KRH48058	ProteinID:KRH48058.1	PFAM:PF00155	PRINTS:PR00753	PANTHER:PTHR43795	PANTHER:PTHR43795:SF25
InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_dom1	InterPro:PyrdxlP-dep_Trfase_major	SUPFAM:SSF53383	UniParc:UPI00023C7B94	:

Description

hypothetical protein

Coordinates

chr7:+:5923612..5927198

Molecular Weight (calculated)

53792.7 Da

IEP (calculated)

7.865

GRAVY (calculated)

-0.292

Length

474 amino acids

Sequence
(BLAST)

001: MQNQQLLSKI ANNDKHGENS PYFDGLKAYD RNPFHPKKNP QGVIQMGLAE NQLCFDLIEE WIRNNPKTSI CTPEGVHQFR NIANFQDYHG LREFTNAMAN
101: FMSKVRGGRV KFDADRILMS GGATGANELI MFCLADPGDA FMIPTPFYPG FVRDLCWRTG VQLIPVHCDS SNNFKITREA LEVAYKKAKE DNINVKGLII
201: TNPSNPLGTT LDKDTLKSLV SFINEKNIHL VCDEIYAATV FSSPSYVSVA EVIQEMKHCK RDLIHVIYSL SKDMGYPGFR VGIVYSFNDE VVNCGRKMSS
301: FGLVSTQTQH MLASMLSDEK FVTRFLSENS RRLEQRHDKF MKGLEEVNIT RFPSNAGLFC WMNLKCLLEE PTFEAELKLW RVIIHEVKLN VSPGSSFNCS
401: EPGWFRVCFA NMDDETVDVA LNRIRAFVGK ETKKPVGFKR WQPNLRLSFS SRMFEESVMS PHSPIPTSPL IGAT

Best Arabidopsis Sequence Match ( AT1G01480.1 )
(BLAST)

001: MGLPGKNKGA VLSKIATNNQ HGENSEYFDG WKAYDKDPFH LSRNPHGIIQ MGLAENQLCL DLIKDWVKEN PEASICTLEG IHQFSDIANF QDYHGLKKFR
101: QAIAHFMGKA RGGRVTFDPE RVVMSGGATG ANETIMFCLA DPGDVFLIPS PYYAAFDRDL RWRTGVEIIP VPCSSSDNFK LTVDAAEWAY KKAQESNKKV
201: KGLILTNPSN PLGTMLDKDT LTNLVRFVTR KNIHLVVDEI YAATVFAGGD FVSVAEVVND VDISEVNVDL IHIVYSLSKD MGLPGFRVGI VYSFNDSVVS
301: CARKMSSFGL VSSQTQLMLA SMLSDDQFVD NFLMESSRRL GIRHKVFTTG IKKADIACLT SNAGLFAWMD LRHLLRDRNS FESEIELWHI IIDRVKLNVS
401: PGSSFRCTEP GWFRICFANM DDDTLHVALG RIQDFVSKNK NKIVEKASEN DQVIQNKSAK KLKWTQTNLR LSFRRLYEDG LSSPGIMSPH SPLLRA

Arabidopsis Description

ACS21-aminocyclopropane-1-carboxylate synthase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q06402]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.