Factsheet for Solyc01g095080.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g095080.2.1
Solyc05g050010.2.1
Solyc08g008100.2.1
Solyc08g081540.2.1
Solyc08g081550.2.1
Solyc12g056180.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G61510.1	Solyc01g095080.2.1	AT3G61510.1	14983000
AT3G61510.1	Solyc05g050010.2.1	AT3G61510.1	14983000
AT3G61510.1	Solyc08g008100.2.1	AT4G11280.1	14983000
AT3G61510.1	Solyc08g081540.2.1	AT4G11280.1	14983000
AT3G61510.1	Solyc08g081550.2.1	AT4G11280.1	14983000
AT3G61510.1	Solyc12g056180.1.1	AT4G11280.1	14983000

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400000553	Potato	cytosol	96.49	96.3
Solyc08g008110.2.1	Tomato	cytosol, nucleus	14.64	70.3
KRH00855	Soybean	cytosol	69.48	70.21
Solyc05g050010.2.1	Tomato	cytosol	67.42	68.7
KRH40379	Soybean	cytosol	68.45	68.45
KRH48058	Soybean	cytosol	66.8	68.35
KRH06585	Soybean	cytosol	66.39	67.93
VIT_15s0046g02220.t01	Wine grape	cytosol	61.03	67.58
KRH65284	Soybean	cytosol	17.11	67.48
Solyc08g081540.2.1	Tomato	cytosol	65.98	66.25
Bra007611.1-P	Field mustard	cytosol	63.92	65.54
CDY11360	Canola	cytosol	63.92	65.54
Solyc08g081550.2.1	Tomato	cytosol	63.71	65.47
CDY65356	Canola	cytosol	63.3	64.9
AT3G61510.1	Thale cress	cytosol	65.15	64.75
GSMUA_Achr4P24930_001	Banana	cytosol	63.51	64.03
GSMUA_AchrUn_...	Banana	cytosol	57.73	63.21
Solyc12g056180.1.1	Tomato	cytosol	61.44	63.0
GSMUA_Achr4P29150_001	Banana	cytosol	62.68	62.55
TraesCS2A01G396400.1	Wheat	cytosol	60.21	60.08
TraesCS2D01G394200.1	Wheat	cytosol	60.0	59.88
TraesCS2B01G414800.1	Wheat	cytosol	59.79	59.67
Os04t0578000-01	Rice	cytosol	58.97	59.21
Solyc08g008100.2.1	Tomato	nucleus	44.54	59.18
Zm00001d002592_P002	Maize	cytosol	58.97	58.97
EES12700	Sorghum	cytosol	59.38	58.66
Solyc12g008740.1.1	Tomato	cytosol	50.72	56.68
Zm00001d026060_P003	Maize	cytosol	59.18	56.27
Solyc07g026900.1.1	Tomato	cytosol	50.52	55.56
Solyc02g063540.1.1	Tomato	cytosol	31.34	53.52
Solyc02g091990.2.1	Tomato	cytosol	51.34	53.09
Solyc03g043890.2.1	Tomato	cytosol	48.87	50.32
Solyc04g077410.2.1	Tomato	cytosol	48.25	49.68
HORVU2Hr1G094230.2	Barley	cytosol	47.01	47.11
Solyc03g007070.2.1	Tomato	cytosol	38.35	34.77
Solyc08g079750.2.1	Tomato	plastid	37.94	33.58
Solyc01g007940.2.1	Tomato	cytosol	20.41	20.93
Solyc05g013380.2.1	Tomato	extracellular, nucleus, plastid	20.62	20.79
Solyc03g123600.2.1	Tomato	cytosol	18.97	19.01
Solyc06g063090.2.1	Tomato	extracellular	19.18	17.16
Solyc03g123610.2.1	Tomato	plastid	19.59	15.68

Protein Annotations

MapMan:11.5.1.1	PDB:1IAX	PDB:1IAY	Gene3D:3.40.640.10	Gene3D:3.90.1150.10	InterPro:Aminotransferase_I/II
ProteinID:CAA41855.1	GO:GO:0000003	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009693	GO:GO:0009835	GO:GO:0009987
GO:GO:0016829	GO:GO:0016847	GO:GO:0030170	GO:GO:0042218	InterPro:IPR015421	InterPro:IPR015422
EMBL:M34289	InterPro:NHTrfase_class1_PyrdxlP-BS	UniProt:P18485	PFAM:PF00155	PRINTS:PR00753	ScanProsite:PS00105
PANTHER:PTHR43795	PANTHER:PTHR43795:SF25	InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_dom1	InterPro:PyrdxlP-dep_Trfase_major	SUPFAM:SSF53383
EnsemblPlantsGene:Solyc01g095080.2	EnsemblPlants:Solyc01g095080.2.1	UniParc:UPI0000124E30	EMBL:X59145	SEG:seg	:

Description

ACS21-aminocyclopropane-1-carboxylate synthase 2 [Source:UniProtKB/Swiss-Prot;Acc:P18485]

Coordinates

chr1:-:86453267..86456196

Molecular Weight (calculated)

54665.6 Da

IEP (calculated)

7.873

GRAVY (calculated)

-0.290

Length

485 amino acids

Sequence
(BLAST)

001: MGFEIAKTNS ILSKLATNEE HGENSPYFDG WKAYDSDPFH PLKNPNGVIQ MGLAENQLCL DLIEDWIKRN PKGSICSEGI KSFKAIANFQ DYHGLPEFRK
101: AIAKFMEKTR GGRVRFDPER VVMAGGATGA NETIIFCLAD PGDAFLVPSP YYPAFNRDLR WRTGVQLIPI HCESSNNFKI TSKAVKEAYE NAQKSNIKVK
201: GLILTNPSNP LGTTLDKDTL KSVLSFTNQH NIHLVCDEIY AATVFDTPQF VSIAEILDEQ EMTYCNKDLV HIVYSLSKDM GLPGFRVGII YSFNDDVVNC
301: ARKMSSFGLV STQTQYFLAA MLSDEKFVDN FLRESAMRLG KRHKHFTNGL EVVGIKCLKN NAGLFCWMDL RPLLRESTFD SEMSLWRVII NDVKLNVSPG
401: SSFECQEPGW FRVCFANMDD GTVDIALARI RRFVGVEKSG DKSSSMEKKQ QWKKNNLRLS FSKRMYDESV LSPLSSPIPP SPLVR

Best Arabidopsis Sequence Match ( AT1G01480.1 )
(BLAST)

001: MGLPGKNKGA VLSKIATNNQ HGENSEYFDG WKAYDKDPFH LSRNPHGIIQ MGLAENQLCL DLIKDWVKEN PEASICTLEG IHQFSDIANF QDYHGLKKFR
101: QAIAHFMGKA RGGRVTFDPE RVVMSGGATG ANETIMFCLA DPGDVFLIPS PYYAAFDRDL RWRTGVEIIP VPCSSSDNFK LTVDAAEWAY KKAQESNKKV
201: KGLILTNPSN PLGTMLDKDT LTNLVRFVTR KNIHLVVDEI YAATVFAGGD FVSVAEVVND VDISEVNVDL IHIVYSLSKD MGLPGFRVGI VYSFNDSVVS
301: CARKMSSFGL VSSQTQLMLA SMLSDDQFVD NFLMESSRRL GIRHKVFTTG IKKADIACLT SNAGLFAWMD LRHLLRDRNS FESEIELWHI IIDRVKLNVS
401: PGSSFRCTEP GWFRICFANM DDDTLHVALG RIQDFVSKNK NKIVEKASEN DQVIQNKSAK KLKWTQTNLR LSFRRLYEDG LSSPGIMSPH SPLLRA

Arabidopsis Description

ACS21-aminocyclopropane-1-carboxylate synthase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q06402]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.