Factsheet for Solyc12g008740.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 2
peroxisome 1
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g063540.1.1
Solyc02g091990.2.1
Solyc03g043890.2.1
Solyc07g026900.1.1
Solyc12g008740.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G26200.1	Solyc02g063540.1.1	AT2G22810.1	14983000
AT4G26200.1	Solyc02g091990.2.1	AT2G22810.1	14983000
AT4G26200.1	Solyc03g043890.2.1	AT2G22810.1	14983000
AT4G26200.1	Solyc07g026900.1.1	AT4G26200.1	14983000
AT4G26200.1	Solyc12g008740.1.1	AT4G26200.1	14983000

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400000771	Potato	cytosol	97.23	97.23
Solyc07g026900.1.1	Tomato	cytosol	81.34	80.05
VIT_11s0016g02560.t01	Wine grape	cytosol, nucleus, peroxisome	80.88	78.88
KRH41440	Soybean	cytosol	78.11	77.05
KRH60148	Soybean	cytosol	77.42	76.36
KRH74169	Soybean	cytosol	77.19	75.11
KRH49039	Soybean	cytosol	76.73	74.66
AT4G26200.1	Thale cress	cytosol	75.12	72.93
CDX89355	Canola	cytosol	74.88	72.54
Bra026456.1-P	Field mustard	cytosol	74.65	72.32
CDX94359	Canola	cytosol	74.19	71.88
Bra019117.1-P	Field mustard	cytosol	74.65	71.84
CDY42751	Canola	cytosol	74.65	71.84
CDY71142	Canola	cytosol	73.96	71.65
CDX92755	Canola	cytosol	67.97	70.91
CDY72652	Canola	cytosol	32.72	70.65
GSMUA_Achr10P...	Banana	cytosol	68.89	67.95
GSMUA_Achr4P30870_001	Banana	cytosol	65.9	67.77
TraesCS3D01G108700.1	Wheat	cytosol, plastid	67.51	64.82
TraesCS3A01G106600.1	Wheat	cytosol, plastid	67.51	64.82
TraesCS3B01G125200.1	Wheat	plastid	67.28	64.18
EES00139	Sorghum	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	68.2	63.93
Zm00001d039487_P001	Maize	mitochondrion	66.36	62.34
Os05t0196600-00	Rice	cytosol	64.75	62.17
HORVU3Hr1G019430.6	Barley	cytosol, mitochondrion	58.53	59.07
Solyc02g063540.1.1	Tomato	cytosol	37.1	56.69
Os05t0319200-00	Rice	cytosol, mitochondrion, plastid	64.06	56.05
Os01t0192900-00	Rice	endoplasmic reticulum, plasma membrane	64.98	52.91
Solyc02g091990.2.1	Tomato	cytosol	56.91	52.67
Solyc03g043890.2.1	Tomato	cytosol	56.68	52.23
Solyc01g095080.2.1	Tomato	cytosol	56.68	50.72
Solyc08g008110.2.1	Tomato	cytosol, nucleus	11.75	50.49
Solyc04g077410.2.1	Tomato	cytosol	54.61	50.32
Solyc05g050010.2.1	Tomato	cytosol	55.07	50.21
Solyc08g081540.2.1	Tomato	cytosol	54.84	49.28
Solyc12g056180.1.1	Tomato	cytosol	53.69	49.26
Solyc08g081550.2.1	Tomato	cytosol	52.3	48.09
Solyc08g008100.2.1	Tomato	nucleus	38.48	45.75
Solyc03g007070.2.1	Tomato	cytosol	45.39	36.82
Solyc08g079750.2.1	Tomato	plastid	44.01	34.85
HORVU3Hr1G019410.1	Barley	endoplasmic reticulum	14.98	28.14
Solyc05g013380.2.1	Tomato	extracellular, nucleus, plastid	21.2	19.13
Solyc01g007940.2.1	Tomato	cytosol	20.74	19.03
Solyc06g063090.2.1	Tomato	extracellular	22.58	18.08
Solyc03g123600.2.1	Tomato	cytosol	20.05	17.98
Solyc03g123610.2.1	Tomato	plastid	20.74	14.85

Protein Annotations

MapMan:11.5.1.1	Gene3D:3.40.640.10	Gene3D:3.90.1150.10	InterPro:Aminotransferase_I/II	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0030170	InterPro:IPR015421
InterPro:IPR015422	UniProt:K4DBW2	InterPro:NHTrfase_class1_PyrdxlP-BS	PFAM:PF00155	PRINTS:PR00753	ScanProsite:PS00105
PANTHER:PTHR43795	PANTHER:PTHR43795:SF28	InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_dom1	InterPro:PyrdxlP-dep_Trfase_major	SUPFAM:SSF53383
EnsemblPlantsGene:Solyc12g008740.1	EnsemblPlants:Solyc12g008740.1.1	UniParc:UPI000276957F	:	:	:

Description

No Description!

Coordinates

chr12:-:2099000..2101472

Molecular Weight (calculated)

49173.7 Da

IEP (calculated)

7.872

GRAVY (calculated)

-0.326

Length

434 amino acids

Sequence
(BLAST)

001: MAIVELSKVA NSDTHGEDSP YFAGWKAYDE DPFDEVHNPC GVIQMGLAEN QVSFDMVEDY LEKHSKTINC GSGISNFREN ALFQDYHGLY SFRKSMAKFM
101: EKIRGGRAKF NPDRVVITAG ATAANELLTF ILADPGDALL VPTPYYPGFD RDLRWRTGVK IIPIHCNSSN NFQVTPQALE SAYEEAKFNK IKVRGILITN
201: PSNPLGATIQ RSNLEDILDF VVRKNIHLIS DEIYSGSAFC SSKFVSIAEV LKSRNDVDSE RVHIVYSLSK DLGLPGFRVG TIYSYNDNVV TTARRMSSFT
301: LISSQTQQLL ASMLSNEEFT TNYIKTNRDR LRKRYEKIID GLKRSGIECL KGNAGLFCWM NLSQLLEKST KECELKLWNS ILCEVKLNIS PGSSCHCSEP
401: GWFRVCFANM SEQTLEIALK RLHNFMQRRT QNRY

Best Arabidopsis Sequence Match ( AT4G26200.1 )
(BLAST)

001: MGLPLMMERS SNNNNVELSR VAVSDTHGED SPYFAGWKAY DENPYDESHN PSGVIQMGLA ENQVSFDLLE TYLEKKNPEG SMWGSKGAPG FRENALFQDY
101: HGLKTFRQAM ASFMEQIRGG KARFDPDRIV LTAGATAANE LLTFILADPN DALLVPTPYY PGFDRDLRWR TGVKIVPIHC DSSNHFQITP EALESAYQTA
201: RDANIRVRGV LITNPSNPLG ATVQKKVLED LLDFCVRKNI HLVSDEIYSG SVFHASEFTS VAEIVENIDD VSVKERVHIV YSLSKDLGLP GFRVGTIYSY
301: NDNVVRTARR MSSFTLVSSQ TQHMLASMLS DEEFTEKYIR INRERLRRRY DTIVEGLKKA GIECLKGNAG LFCWMNLGFL LEKKTKDGEL QLWDVILKEL
401: NLNISPGSSC HCSEVGWFRV CFANMSENTL EIALKRIHEF MDRRRRF

Arabidopsis Description

ACS71-aminocyclopropane-1-carboxylate synthase 7 [Source:UniProtKB/Swiss-Prot;Acc:Q9STR4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.