CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH04373
KRH28319
KRH41440
KRH49039
KRH58165
KRH60148
KRH74169
KRH77167

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G26200.1	KRH04373	AT2G22810.1	14983000
AT4G26200.1	KRH28319	AT2G22810.1	14983000
AT4G26200.1	KRH58165	AT2G22810.1	14983000
AT4G26200.1	KRH77167	AT2G22810.1	14983000
AT4G26200.1	KRH41440	AT4G26200.1	14983000
AT4G26200.1	KRH49039	AT4G26200.1	14983000
AT4G26200.1	KRH60148	AT4G26200.1	14983000
AT4G26200.1	KRH74169	AT4G26200.1	14983000

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH60148	Soybean	cytosol	96.82	96.82
KRH49039	Soybean	cytosol	91.14	89.91
KRH74169	Soybean	cytosol	90.23	89.01
VIT_11s0016g02560.t01	Wine grape	cytosol, nucleus, peroxisome	86.14	85.17
CDY72652	Canola	cytosol	36.36	79.6
PGSC0003DMT400043903	Potato	cytosol	79.55	79.37
Solyc07g026900.1.1	Tomato	cytosol	78.64	78.46
PGSC0003DMT400000771	Potato	cytosol	77.27	78.34
Solyc12g008740.1.1	Tomato	cytosol	77.05	78.11
AT4G26200.1	Thale cress	cytosol	78.41	77.18
CDX94359	Canola	cytosol	78.41	77.01
CDY71142	Canola	cytosol	77.95	76.56
CDX89355	Canola	cytosol	77.95	76.56
Bra026456.1-P	Field mustard	cytosol	77.95	76.56
CDY42751	Canola	cytosol	77.5	75.61
Bra019117.1-P	Field mustard	cytosol	77.5	75.61
CDX92755	Canola	cytosol	70.91	75.0
GSMUA_Achr4P30870_001	Banana	cytosol	70.23	73.22
GSMUA_Achr10P...	Banana	cytosol	72.27	72.27
EES00139	Sorghum	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	72.27	68.68
TraesCS3D01G108700.1	Wheat	cytosol, plastid	70.23	68.36
TraesCS3A01G106600.1	Wheat	cytosol, plastid	69.77	67.92
TraesCS3B01G125200.1	Wheat	plastid	70.23	67.91
Zm00001d039487_P001	Maize	mitochondrion	70.0	66.67
Os05t0196600-00	Rice	cytosol	68.18	66.37
HORVU3Hr1G019430.6	Barley	cytosol, mitochondrion	60.68	62.09
Os05t0319200-00	Rice	cytosol, mitochondrion, plastid	67.73	60.08
KRH61460	Soybean	cytosol	45.23	56.86
Os01t0192900-00	Rice	endoplasmic reticulum, plasma membrane	68.18	56.29
KRH04373	Soybean	cytosol	60.0	55.58
KRH28319	Soybean	cytosol	58.86	54.99
KRH77167	Soybean	cytosol	58.64	54.89
KRH58165	Soybean	cytosol	58.86	53.96
KRH41241	Soybean	cytosol	58.18	52.89
KRH59970	Soybean	cytosol	57.5	52.27
KRH52156	Soybean	cytosol	55.45	52.25
KRH06585	Soybean	cytosol	55.68	51.69
KRH48058	Soybean	cytosol	55.45	51.48
KRH27892	Soybean	cytosol	55.23	50.62
KRH00855	Soybean	cytosol	53.41	48.96
KRH40379	Soybean	cytosol	52.73	47.84
KRH65284	Soybean	cytosol	13.18	47.15
KRH77442	Soybean	endoplasmic reticulum, mitochondrion, plasma membrane, plastid	42.5	37.25
KRH27993	Soybean	endoplasmic reticulum, golgi, mitochondrion, plastid	42.27	37.13
KRH38710	Soybean	plastid	43.41	36.11
KRH09217	Soybean	plastid	43.18	35.98
HORVU3Hr1G019410.1	Barley	endoplasmic reticulum	16.36	31.17
KRH74536	Soybean	cytosol	19.77	18.09
KRH69622	Soybean	cytosol	19.77	18.09
KRH47719	Soybean	endoplasmic reticulum	20.91	17.01
KRH06285	Soybean	mitochondrion	20.68	16.98

Protein Annotations

EntrezGene:100778925	MapMan:11.5.1.1	Gene3D:3.40.640.10	Gene3D:3.90.1150.10	EMBL:ACUP02004766	InterPro:Aminotransferase_I/II
ncoils:Coil	EnsemblPlantsGene:GLYMA_08G030100	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0030170	UniProt:I1KPT0	InterPro:IPR015421	InterPro:IPR015422
EnsemblPlants:KRH41440	ProteinID:KRH41440	ProteinID:KRH41440.1	InterPro:NHTrfase_class1_PyrdxlP-BS	PFAM:PF00155	PRINTS:PR00753
ScanProsite:PS00105	PANTHER:PTHR43795	PANTHER:PTHR43795:SF28	InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_dom1	InterPro:PyrdxlP-dep_Trfase_major
SUPFAM:SSF53383	UniParc:UPI0002337F3A	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr8:+:2410511..2412591

Molecular Weight (calculated)

49630.2 Da

IEP (calculated)

6.260

GRAVY (calculated)

-0.312

Length

440 amino acids

Sequence
(BLAST)

001: MGIKIEQEQP CVELSRVAVS ETHGEDSPYF AGWKAYDENP YDELTNSSGV IQMGLAENQV SFDLLEKYLE EHSEASTWGK GAPGFRENAL FQDYHGLKSF
101: RTAMASFMEQ IRGGRAKFDP DRVVLTAGAT AANELLTFIL ANPGDALLVP TPYYPGFDRD LRWRTGVNIV PIHCDSSNNF QITLQALEAA YKEAEAKNTR
201: VRGVLITNPS NPLGATIQRS VLEELLDFVT RKNIHLVSDE IYSGSVFSSS EFVSVAEILE ARQYKNAERV HIVYSLSKDL GLPGFRVGTI YSYNDKVVTT
301: ARRMSSFTLI SSQTQHLLAS MLSDKKFTEN YIETNRQRLK KRYQMIIEGL RRVGIECLKG NAGLFCWMNL SPLLEKPTRE GELELWNAIL HEVKLNISPG
401: SSCHCSEPGW FRVCFANMSE QTLGVALERL RNFMERMKKD

Best Arabidopsis Sequence Match ( AT4G26200.1 )
(BLAST)

001: MGLPLMMERS SNNNNVELSR VAVSDTHGED SPYFAGWKAY DENPYDESHN PSGVIQMGLA ENQVSFDLLE TYLEKKNPEG SMWGSKGAPG FRENALFQDY
101: HGLKTFRQAM ASFMEQIRGG KARFDPDRIV LTAGATAANE LLTFILADPN DALLVPTPYY PGFDRDLRWR TGVKIVPIHC DSSNHFQITP EALESAYQTA
201: RDANIRVRGV LITNPSNPLG ATVQKKVLED LLDFCVRKNI HLVSDEIYSG SVFHASEFTS VAEIVENIDD VSVKERVHIV YSLSKDLGLP GFRVGTIYSY
301: NDNVVRTARR MSSFTLVSSQ TQHMLASMLS DEEFTEKYIR INRERLRRRY DTIVEGLKKA GIECLKGNAG LFCWMNLGFL LEKKTKDGEL QLWDVILKEL
401: NLNISPGSSC HCSEVGWFRV CFANMSENTL EIALKRIHEF MDRRRRF

Arabidopsis Description

ACS71-aminocyclopropane-1-carboxylate synthase 7 [Source:UniProtKB/Swiss-Prot;Acc:Q9STR4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.