CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
plastid 1
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH52586
KRH61926

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G08040.1	KRH52586	AT1G71230.1	21798944
AT4G08040.1	KRH61926	AT1G71230.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH61460	Soybean	cytosol	71.31	95.14
VIT_18s0001g08520.t01	Wine grape	nucleus	67.45	67.45
KRH04373	Soybean	cytosol	65.95	64.84
KRH77167	Soybean	cytosol	65.1	64.68
AT4G08040.1	Thale cress	cytosol	62.95	63.91
KRH28319	Soybean	cytosol	64.45	63.91
KRH58165	Soybean	cytosol	65.31	63.54
PGSC0003DMT400012600	Potato	cytosol	63.17	63.17
Solyc04g077410.2.1	Tomato	cytosol	63.6	63.06
Bra000637.1-P	Field mustard	cytosol	61.88	62.28
CDX83146	Canola	cytosol	61.88	62.28
CDY34015	Canola	cytosol	61.67	62.07
KRH60148	Soybean	cytosol	52.46	55.68
KRH41440	Soybean	cytosol	52.25	55.45
KRH74169	Soybean	cytosol	51.82	54.26
KRH49039	Soybean	cytosol	51.82	54.26
KRH27892	Soybean	cytosol	49.68	48.33
KRH06585	Soybean	cytosol	47.97	47.26
KRH48058	Soybean	cytosol	47.54	46.84
KRH41241	Soybean	cytosol	48.39	46.69
KRH59970	Soybean	cytosol	47.54	45.87
KRH00855	Soybean	cytosol	46.68	45.42
KRH40379	Soybean	cytosol	45.82	44.12
KRH65284	Soybean	cytosol	10.71	40.65
KRH09217	Soybean	plastid	40.47	35.8
KRH38710	Soybean	plastid	40.26	35.54
KRH77442	Soybean	endoplasmic reticulum, mitochondrion, plasma membrane, plastid	38.12	35.46
KRH27993	Soybean	endoplasmic reticulum, golgi, mitochondrion, plastid	36.62	34.13
KRH69622	Soybean	cytosol	19.27	18.71
KRH74536	Soybean	cytosol	19.06	18.5
KRH47719	Soybean	endoplasmic reticulum	19.49	16.82
KRH06285	Soybean	mitochondrion	19.06	16.6

Protein Annotations

EntrezGene:100803507	MapMan:11.5.1.1	Gene3D:3.40.640.10	Gene3D:3.90.1150.10	EMBL:ACUP02003410	InterPro:Aminotransferase_I/II
EnsemblPlantsGene:GLYMA_06G049900	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0030170	InterPro:IPR015421	InterPro:IPR015422	UniProt:K7KT62	EnsemblPlants:KRH52156
ProteinID:KRH52156	ProteinID:KRH52156.1	InterPro:NHTrfase_class1_PyrdxlP-BS	PFAM:PF00155	PRINTS:PR00753	ScanProsite:PS00105
PANTHER:PTHR43795	PANTHER:PTHR43795:SF10	InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_dom1	InterPro:PyrdxlP-dep_Trfase_major	SUPFAM:SSF53383
UniParc:UPI000295E7EC	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr6:+:3766667..3772311

Molecular Weight (calculated)

52566.7 Da

IEP (calculated)

9.053

GRAVY (calculated)

-0.161

Length

467 amino acids

Sequence
(BLAST)

001: MNMLSRKASH DSHGQDSSYF LGWQEYEKNP YHPIQNPTGI IQMGLAENQL LLPGNKRRKY INMLSFDLLK SWLRRNSDIV GMKKDGISVF RELALFQDYH
101: GLPALKNELV DFMAKIRENG IKFASEKLVL TAGATPANEI LMFCLADPGE AFILPTPYYP GFDRDLKWRT GVEIVPMHCS SSNGFRITSS ALEQAYQQAQ
201: KLNLKIKGVL VTNPSNPLGI TMTKTELNHL VDFAIDKNIH IISDEIYSGT VFDSPKFVSI TEVVNERITT VNNNSITSIW NRIHIVYGFS KDLGIPGFRV
301: GMIFSNNETV VAAATKMSSF GLVSSQTQYL VANLLKDKKF TCKHMEETQK RLKRRKEMLV SGLRNAGIRC LKSNAGLFCW VDMRHLLGSA TTFEAEKELW
401: MNILCKVGLN ISPGSSCHCC EPGWFRVCFA NMSEDTLEVA MRRIKAFADS ITISTSVVRG SIAKWEN

Best Arabidopsis Sequence Match ( AT2G22810.1 )
(BLAST)

001: MVQLSRKATC NSHGQVSSYF LGWEEYEKNP YDVTKNPQGI IQMGLAENQL CFDLLESWLA QNTDAACFKR DGQSVFRELA LFQDYHGLSS FKNAFADFMS
101: ENRGNRVSFD SNNLVLTAGA TSANETLMFC LADPGDAFLL PTPYYPGFDR DLKWRTGVEI VPIQSSSTNG FRITKLALEE AYEQAKKLDL NVKGILITNP
201: SNPLGTTTTQ TELNILFDFI TKNKNIHLVS DEIYSGTVFN SSEFISVMEI LKNNQLENTD VLNRVHIVCS LSKDLGLPGF RVGAIYSNDK DVISAATKMS
301: SFGLVSSQTQ YLLSSLLSDK KFTKNYLREN QKRLKNRQRK LVLGLEAIGI KCLKSNAGLF CWVDMRPLLR SKTFEAEMDL WKKIVYEVKL NISPGSSCHC
401: EEPGWFRVCF ANMIDETLKL ALKRLKMLVD DENSSRRCQK SKSERLNGSR KKTMSNVSNW VFRLSFHDRE AEER

Arabidopsis Description

ACS41-aminocyclopropane-1-carboxylate synthase 4 [Source:UniProtKB/Swiss-Prot;Acc:Q43309]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.