Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 1
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_03s0038g04360.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G08040.1 | VIT_03s0038g04360.t01 | AT1G71230.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_00s0840g00010.t01 | Wine grape | cytosol | 74.09 | 73.77 |
| VIT_00s1437g00010.t01 | Wine grape | cytosol | 73.88 | 73.56 |
| KRH61460 | Soybean | cytosol | 51.61 | 68.86 |
| PGSC0003DMT400012600 | Potato | cytosol | 67.88 | 67.88 |
| KRH52156 | Soybean | cytosol | 67.45 | 67.45 |
| Solyc04g077410.2.1 | Tomato | cytosol | 67.45 | 66.88 |
| CDY34015 | Canola | cytosol | 65.31 | 65.73 |
| Bra000637.1-P | Field mustard | cytosol | 64.88 | 65.3 |
| CDX83146 | Canola | cytosol | 64.67 | 65.09 |
| AT4G08040.1 | Thale cress | cytosol | 63.81 | 64.78 |
| VIT_11s0016g02560.t01 | Wine grape | cytosol, nucleus, peroxisome | 54.82 | 57.53 |
| VIT_02s0025g00360.t01 | Wine grape | cytosol | 50.32 | 48.86 |
| VIT_15s0046g02220.t01 | Wine grape | cytosol | 44.97 | 47.95 |
| VIT_02s0234g00090.t01 | Wine grape | cytosol | 50.75 | 46.84 |
| VIT_00s1764g00010.t01 | Wine grape | cytosol | 31.48 | 42.12 |
| VIT_16s0022g02010.t01 | Wine grape | cytosol | 40.26 | 34.94 |
| VIT_00s0225g00130.t01 | Wine grape | cytosol | 18.42 | 17.88 |
| VIT_09s0002g00340.t01 | Wine grape | mitochondrion | 19.06 | 16.92 |
| VIT_02s0025g04980.t01 | Wine grape | cytosol, nucleus | 19.91 | 5.36 |
Protein Annotations
| EntrezGene:100250639 | wikigene:100250639 | MapMan:11.5.1.1 | Gene3D:3.40.640.10 | Gene3D:3.90.1150.10 | EMBL:AM430471 |
| InterPro:Aminotransferase_I/II | ProteinID:CAN82363 | ProteinID:CAN82363.1 | ProteinID:CCB45719 | ProteinID:CCB45719.1 | UniProt:F6H168 |
| EMBL:FN595227 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0030170 | InterPro:IPR015421 | InterPro:IPR015422 | EntrezGene:LOC100250639 | wikigene:LOC100250639 |
| InterPro:NHTrfase_class1_PyrdxlP-BS | PFAM:PF00155 | PRINTS:PR00753 | ScanProsite:PS00105 | PANTHER:PTHR43795 | PANTHER:PTHR43795:SF10 |
| InterPro:PyrdxlP-dep_Trfase | InterPro:PyrdxlP-dep_Trfase_dom1 | InterPro:PyrdxlP-dep_Trfase_major | SUPFAM:SSF53383 | UniParc:UPI00015C74E2 | ArrayExpress:VIT_18s0001g08520 |
| EnsemblPlantsGene:VIT_18s0001g08520 | EnsemblPlants:VIT_18s0001g08520.t01 | RefSeq:XP_002283512 | RefSeq:XP_002283512.1 | : | : |
Description
No Description!
Coordinates
chr18:-:6960144..6962232
Molecular Weight (calculated)
52993.5 Da
IEP (calculated)
8.052
GRAVY (calculated)
-0.329
Length
467 amino acids
Sequence
(BLAST)
(BLAST)
001: MLSRKARLDA HGEDSSYFLG WKEYEKNAYD DVQNPTGIIQ MGLAENQLSF DLLESWLASN QDAARLTKNG ESVFRELALF QDYHGLPDFK NELVEFMAEI
101: RGNKVNFDPR KLVLMAGATS ANETLMFCIA ESGDAFLLPT PYYPGFDRDL KWRTGVELVP IHCSSSNGFK VTKCALEEAY QQAHKLSLNV KGVLITNPSN
201: PLGTTMGRDE LNDLIDFAVA KKIHIISDEI YSGTVFDHPS FISIMEALMD RKLQDTDLWS RVHIVYSLSK DLGLPGFRVG MIYSNNETVV SAATKMSSFG
301: LISSQTQYLL SKILSDKKFT RNYLKENRKR LKTRREMIVA ALRNAGIGCL KSNAGLFCWV DMRHLLSSNT FDAEMELWKR ILREAGLNIS PGASCHCSEP
401: GWFRICFANM SEDTLNLSMQ RIKALAERIQ QCRRGRVTHQ DSGCNSRRRS FSKWVLNLCS YDREPDR
101: RGNKVNFDPR KLVLMAGATS ANETLMFCIA ESGDAFLLPT PYYPGFDRDL KWRTGVELVP IHCSSSNGFK VTKCALEEAY QQAHKLSLNV KGVLITNPSN
201: PLGTTMGRDE LNDLIDFAVA KKIHIISDEI YSGTVFDHPS FISIMEALMD RKLQDTDLWS RVHIVYSLSK DLGLPGFRVG MIYSNNETVV SAATKMSSFG
301: LISSQTQYLL SKILSDKKFT RNYLKENRKR LKTRREMIVA ALRNAGIGCL KSNAGLFCWV DMRHLLSSNT FDAEMELWKR ILREAGLNIS PGASCHCSEP
401: GWFRICFANM SEDTLNLSMQ RIKALAERIQ QCRRGRVTHQ DSGCNSRRRS FSKWVLNLCS YDREPDR
001: MGLLSKKASC NTHGQDSSYF WGWEEYEKNP YDEIKNPDGI IQMGLAENQL SFDLIESWLA KNPDAANFQR EGQSIFRELA LFQDYHGLPS FKNAMADFMS
101: ENRGNRVSFN PNKLVLTAGA TPANETLMFC LADPGDAFLL PTPYYPGFDR DLKWRTGAEI VPIQCKSANG FRITKVALEE AYEQAQKLNL KVKGVLITNP
201: SNPLGTTTTR TELNHLLDFI SRKKIHLISD EIYSGTVFTN PGFISVMEVL KDRKLENTDV FDRVHIVYSL SKDLGLPGFR VGVIYSNDDF VVSAATKMSS
301: FGLISSQTQY LLSALLSDKT FTKNYLEENQ IRLKNRHKKL VSGLEAAGIE CLKSNAGLFC WVDMRHLLKS NTFEAEIELW KKIVYEVKLN ISPGSSCHCN
401: EPGWFRVCFA NLSEETLKVA LDRLKRFVDG PSPTRRSQSE HQRLKNLRKM KVSNWVFRLS FHDREPEER
101: ENRGNRVSFN PNKLVLTAGA TPANETLMFC LADPGDAFLL PTPYYPGFDR DLKWRTGAEI VPIQCKSANG FRITKVALEE AYEQAQKLNL KVKGVLITNP
201: SNPLGTTTTR TELNHLLDFI SRKKIHLISD EIYSGTVFTN PGFISVMEVL KDRKLENTDV FDRVHIVYSL SKDLGLPGFR VGVIYSNDDF VVSAATKMSS
301: FGLISSQTQY LLSALLSDKT FTKNYLEENQ IRLKNRHKKL VSGLEAAGIE CLKSNAGLFC WVDMRHLLKS NTFEAEIELW KKIVYEVKLN ISPGSSCHCN
401: EPGWFRVCFA NLSEETLKVA LDRLKRFVDG PSPTRRSQSE HQRLKNLRKM KVSNWVFRLS FHDREPEER
Arabidopsis Description
ACS81-aminocyclopropane-1-carboxylate synthase-like protein [Source:UniProtKB/TrEMBL;Acc:Q56Y32]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.