Factsheet for VIT_02s0025g00360.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_00s0840g00010.t01
VIT_00s1437g00010.t01
VIT_02s0025g00360.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G11280.1	VIT_00s0840g00010.t01	AT2G22810.1	14983000
AT4G11280.1	VIT_00s1437g00010.t01	AT2G22810.1	14983000
AT4G11280.1	VIT_02s0025g00360.t01	AT4G11280.1	14983000

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400032096	Potato	cytosol	74.01	73.55
Solyc08g081540.2.1	Tomato	cytosol	73.39	73.08
VIT_15s0046g02220.t01	Wine grape	cytosol	66.32	72.83
PGSC0003DMT400031769	Potato	cytosol	72.97	72.37
KRH27892	Soybean	cytosol	70.89	71.04
PGSC0003DMT400014932	Potato	cytosol	71.31	70.58
Solyc08g081550.2.1	Tomato	cytosol	69.23	70.55
KRH41241	Soybean	cytosol	70.69	70.25
KRH59970	Soybean	cytosol	70.48	70.04
AT4G11280.1	Thale cress	cytosol	67.78	65.86
CDY13251	Canola	cytosol	66.32	64.97
Bra035236.1-P	Field mustard	cytosol	65.49	64.55
CDX86796	Canola	cytosol	65.49	64.55
Solyc12g056180.1.1	Tomato	cytosol	63.41	64.48
GSMUA_Achr4P29150_001	Banana	cytosol	65.07	64.4
Solyc08g008100.2.1	Tomato	nucleus	48.44	63.84
PGSC0003DMT400012864	Potato	cytosol	64.24	63.71
GSMUA_AchrUn_...	Banana	cytosol	58.21	63.21
GSMUA_Achr4P24930_001	Banana	cytosol	62.16	62.16
TraesCS2A01G396400.1	Wheat	cytosol	62.37	61.73
TraesCS2B01G414800.1	Wheat	cytosol	62.37	61.73
TraesCS2D01G394200.1	Wheat	cytosol	62.37	61.73
Zm00001d002592_P002	Maize	cytosol	61.75	61.24
EES12700	Sorghum	cytosol	61.95	60.69
Os04t0578000-01	Rice	cytosol	60.5	60.25
VIT_11s0016g02560.t01	Wine grape	cytosol, nucleus, peroxisome	54.05	58.43
Zm00001d026060_P003	Maize	cytosol	61.12	57.65
VIT_00s1437g00010.t01	Wine grape	cytosol	51.14	52.45
VIT_00s0840g00010.t01	Wine grape	cytosol	51.14	52.45
VIT_18s0001g08520.t01	Wine grape	nucleus	48.86	50.32
HORVU2Hr1G094230.2	Barley	cytosol	47.82	47.52
VIT_02s0234g00090.t01	Wine grape	cytosol	47.61	45.26
VIT_00s1764g00010.t01	Wine grape	cytosol	30.98	42.69
VIT_16s0022g02010.t01	Wine grape	cytosol	40.12	35.87
VIT_09s0002g00340.t01	Wine grape	mitochondrion	20.79	19.01
VIT_00s0225g00130.t01	Wine grape	cytosol	18.92	18.92
VIT_02s0025g04980.t01	Wine grape	cytosol, nucleus	20.79	5.76

Protein Annotations

EntrezGene:100263876	wikigene:100263876	MapMan:11.5.1.1	Gene3D:3.40.640.10	Gene3D:3.90.1150.10	EMBL:AM426886
InterPro:Aminotransferase_I/II	ProteinID:CAN77934	ProteinID:CAN77934.1	ProteinID:CBI34388	ProteinID:CBI34388.3	ncoils:Coil
UniProt:D7TV63	EMBL:FN596251	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016020	GO:GO:0016021	GO:GO:0030170	InterPro:IPR015421	InterPro:IPR015422	EntrezGene:LOC100263876
wikigene:LOC100263876	InterPro:NHTrfase_class1_PyrdxlP-BS	PFAM:PF00155	PRINTS:PR00753	ScanProsite:PS00105	PANTHER:PTHR43795
PANTHER:PTHR43795:SF6	InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_dom1	InterPro:PyrdxlP-dep_Trfase_major	SUPFAM:SSF53383	TIGR:TC63310
UniParc:UPI00015CD264	ArrayExpress:VIT_02s0025g00360	EnsemblPlantsGene:VIT_02s0025g00360	EnsemblPlants:VIT_02s0025g00360.t01	unigene:Vvi.8465	RefSeq:XP_002278489
RefSeq:XP_002278489.2	:	:	:	:	:

Description

No Description!

Coordinates

chr2:-:472140..475170

Molecular Weight (calculated)

54186.8 Da

IEP (calculated)

5.860

GRAVY (calculated)

-0.244

Length

481 amino acids

Sequence
(BLAST)

001: MGYMSNQPQL LSKIATDNGH GENSPYFDGW KAYDSDPYHP IENPGGVIQM GLAENQLSFD IIEEWLLKNP KASICTVEGM SEFRDVAIFQ DYHGLKEFRN
101: AVAKFMGKVR GDRVVFDPDR IVMSGGATGA HELVTFCLAD PGDAFLVPTP YYPGFDRDLR WRTGVQLLPV VCESSNDFKI TREALEAAYE KAQEDNTKVK
201: GLLITNPSNP LGTVLDRETL KSLVSFVNEK NIHLISDEIY AATVFSSPGF ISVSEIIDEM ECNPDLIHIV YSLSKDMGFP GFRVGIVYSY NDDVVNIGRK
301: MSSFGLVSSQ TQHLIASMLS DDEFVESFIT KNSEKLATRY KTFSRGLSQV GIGCLKSNAG LFFWMDLRRL LKEPTVEAEM ALWRLIINEV KLNVSPGSSF
401: HCSEPGWFRV CFANMDDETM EVALRRIRNF VLKAKEKEVS AKRQRWQNNL KVRLSFRGLD EPHLMSPHSP IPQSPLVRAR T

Best Arabidopsis Sequence Match ( AT4G11280.1 )
(BLAST)

001: MVAFATEKKQ DLNLLSKIAS GDGHGENSSY FDGWKAYEEN PFHPIDRPDG VIQMGLAENQ LCGDLMRKWV LKHPEASICT SEGVNQFSDI AIFQDYHGLP
101: EFRQAVAKFM EKTRNNKVKF DPDRIVMSGG ATGAHETVAF CLANPGDGFL VPTPYYPGFD RDLRWRTGVN LVPVTCHSSN GFKITVEALE AAYENARKSN
201: IPVKGLLVTN PSNPLGTTLD RECLKSLVNF TNDKGIHLIA DEIYAATTFG QSEFISVAEV IEEIEDCNRD LIHIVYSLSK DMGLPGLRVG IVYSYNDRVV
301: QIARKMSSFG LVSSQTQHLI AKMLSDEEFV DEFIRESKLR LAARHAEITT GLDGLGIGWL KAKAGLFLWM DLRNLLKTAT FDSETELWRV IVHQVKLNVS
401: PGGSFHCHEP GWFRVCFANM DHKTMETALE RIRVFTSQLE EETKPMAATT MMAKKKKKCW QSNLRLSFSD TRRFDDGFFS PHSPVPPSPL VRAQT

Arabidopsis Description

ACS61-aminocyclopropane-1-carboxylate synthase 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9SAR0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.